Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23260 421 / 1e-144 UGT84B1 UDP-glucosyl transferase 84B1 (.1) AT2G23250 406 / 8e-139 UGT84B2 UDP-glucosyl transferase 84B2 (.1) AT4G15480 341 / 1e-112 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT4G15490 311 / 2e-101 UGT84A3 UDP-Glycosyltransferase superfamily protein (.1) AT3G21560 307 / 2e-99 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT1G05680 303 / 3e-98 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT1G05675 295 / 2e-95 UDP-Glycosyltransferase superfamily protein (.1) AT4G15500 284 / 7e-91 UGT84A4 UDP-Glycosyltransferase superfamily protein (.1) AT4G15550 271 / 9e-86 IAGLU indole-3-acetate beta-D-glucosyltransferase (.1) AT4G14090 268 / 1e-84 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G095500 [exp] 489 / 7e-171 AT2G23260 421 / 2e-144 UDP-glucosyl transferase 84B1 (.1) Potri.009G095200 [exp] 486 / 8e-170 AT2G23260 413 / 5e-141 UDP-glucosyl transferase 84B1 (.1) Potri.009G095100 [exp] 353 / 2e-117 AT4G15480 496 / 3e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G095300 [exp] 348 / 3e-115 AT4G15480 528 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G095400 [exp] 346 / 2e-114 AT4G15480 488 / 2e-169 UDP-Glycosyltransferase superfamily protein (.1) Potri.015G071900 [exp] 315 / 4e-103 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1) Potri.001G389200 [exp] 313 / 3e-102 AT1G05680 494 / 2e-173 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032300 [exp] 295 / 3e-95 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G175000 [exp] 295 / 4e-95 AT2G43840 411 / 8e-141 UDP-glycosyltransferase 74 F1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019808 [exp] 324 / 2e-106 AT4G15480 471 / 9e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10014105 [exp] 312 / 7e-102 AT4G15480 467 / 3e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10019809 [exp] 300 / 2e-97 AT4G15490 429 / 2e-147 UDP-Glycosyltransferase superfamily protein (.1) Lus10020559 [exp] 288 / 2e-92 AT2G43820 436 / 3e-150 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10008742 [exp] 286 / 2e-91 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10020556 [exp] 283 / 1e-90 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10009412 [exp] 282 / 2e-90 AT2G43820 474 / 1e-165 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10027862 [exp] 282 / 5e-90 AT4G15480 414 / 3e-141 UDP-Glycosyltransferase superfamily protein (.1) Lus10010712 [exp] 279 / 5e-89 AT1G24100 462 / 1e-160 UDP-glucosyl transferase 74B1 (.1) Lus10024486 [exp] 266 / 7e-84 AT1G05680 389 / 4e-132 Uridine diphosphate glycosyltransferase 74E2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.007G049600.1 pacid=42765591 polypeptide=Potri.007G049600.1.p locus=Potri.007G049600 ID=Potri.007G049600.1.v4.1 annot-version=v4.1 ATGGGTGTTGAAGATCAAGTGCATGTTCTAGTGGTTACAATGGCATGGCAAGGTCATATAAACCCTATGCTCAAGCTTGCGAAACGCCTTGTATCAAAGG GTGTTCATGTTACTATAGCCACTACTGAGGGTACTCGTTACCTCGCGACGCAAAAACCCAACATCCCTACCTCCTTTACCACCGCCGAAAACACCACAGT CAGAACCCCACAAATCAGTCTTGAGTTCTTCTCTGATGGCCTTGACCTAGAATTTGATCGCTTGAAATATTTTGACTCCTATATTGAATCCCTGGAGACA ATAGGATACATAAATCTCTCCAATCTAATACAAGATTTCACAAACGATGGTAAGAAATTTTCTTGCATTATTAGCAACCCGTTTATGCCATGGGTGCCAA AAATTGCTACTAAATATGGCATTCCTTGCGCAGTACTTTGGATCCAAGCCTGCACTGTCTACTCTATTTACTACCATTACTTTAAGAATCCTAACTCATT TCCAACTCTGATAAGCCCACATGATCAGTTTATAGAATTGCCTGGGATGCCAAAATTACAGGTAAAGGATTTTCCTTCTTTTATCCTCCCTTCATGTTCT CACCCCATCCAAAAACTAGTTTCAAGTTTCATTCAAAACTTGGATGAGGTAAAATGGGTTCTGGGAAATTCTTTTGACGAACTTGAGGAGGAAGTTATTA AGTCCATGGCTTCACTCCATCCAATTTGTCCAATCGGTCCCTTGGTTTCATCATCTCTATTAGGACAAGAAGAGAGCATTAATGGCAGTGTTGATATGTG GATTCCTGAAGATTCATGCATTGAATGGTTGGACAAAAAACCACCTTCTTCAGTTGTTTACATTTCTTTCGGTAGTGTAGCGTCATTTTCGCAAAAACAA ATTGACAACATAGCCATGGGATTGAAGAATAGCAATCGACCATTTCTTTGGGTGATTAAACCTCCGGAAAACACTGGTGGTGAATTGTCATATGATTTTC TAAAGGAGACCGAGGGAAGAGGTTTAGTAGTGGCATGGTGCCCTCAAGAGAAGGTGCTCATGCACCAAGCTGTGGCTTGCTTTATCACTCATTGTGGGTG GAACTCGACGCTAGAGACAATGGTTGCAGGGGTTCCTGTAATTGCTTATCCTGATTGGACAGATCAACCAACAGTTGCAAAACTTGTAACTAGCATGTTT AATGTGGGCGTGAGGTTGGAAGTAGAGAACGGAGTTGCAAGCTCAGAGGAGATAGAAAGGTGCATCATGGAGGTCACAGACGGACCGGAAGCTGCTAAGA TACAGAAAAGGGCTTTGGAGTTGAAGGAGGCTGCGAAGAAAGCAGTTGCAGATGGTGGCTCTTCTGATGCAAATATAGATCAATTTATCAGGGAGTTCAT TGAAAAGTAA
AA sequence Show only first row Show all	>Potri.007G049600.1 pacid=42765591 polypeptide=Potri.007G049600.1.p locus=Potri.007G049600 ID=Potri.007G049600.1.v4.1 annot-version=v4.1 MGVEDQVHVLVVTMAWQGHINPMLKLAKRLVSKGVHVTIATTEGTRYLATQKPNIPTSFTTAENTTVRTPQISLEFFSDGLDLEFDRLKYFDSYIESLET IGYINLSNLIQDFTNDGKKFSCIISNPFMPWVPKIATKYGIPCAVLWIQACTVYSIYYHYFKNPNSFPTLISPHDQFIELPGMPKLQVKDFPSFILPSCS HPIQKLVSSFIQNLDEVKWVLGNSFDELEEEVIKSMASLHPICPIGPLVSSSLLGQEESINGSVDMWIPEDSCIEWLDKKPPSSVVYISFGSVASFSQKQ IDNIAMGLKNSNRPFLWVIKPPENTGGELSYDFLKETEGRGLVVAWCPQEKVLMHQAVACFITHCGWNSTLETMVAGVPVIAYPDWTDQPTVAKLVTSMF NVGVRLEVENGVASSEEIERCIMEVTDGPEAAKIQKRALELKEAAKKAVADGGSSDANIDQFIREFIEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23260		UGT84B1	UDP-glucosyl transferase 84B1 ...		Potri.007G049600 [exp]	0	1
AT3G56891			Heavy metal transport/detoxifi...		Potri.006G024800 [exp]	3.46	0.9135
					Potri.007G049700 [exp]	6.70	0.8588
					Potri.018G033450 [exp]	7.74	0.8937
					Potri.010G047000 [exp]	16.24	0.8646
					Potri.005G106550 [exp]	129.68	0.8277
AT4G32680			unknown protein		Potri.006G244600 [exp]	163.90	0.7942
					Potri.017G018901 [exp]	193.44	0.8055
AT2G47630			alpha/beta-Hydrolases superfam...		Potri.002G204200 [exp]	223.10	0.8125
AT3G48550			unknown protein		Potri.015G096500 [exp]	239.69	0.8105
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Potri.018G138100 [exp]	278.12	0.7996

Compare expression of checked genes

Potri.007G049600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.