Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37300 129 / 6e-38 MEE59 maternal effect embryo arrest 59 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G041100 [exp] 77 / 1e-17 AT4G37300 96 / 2e-25 maternal effect embryo arrest 59 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040706 [exp] 73 / 5e-16 AT4G37300 108 / 5e-30 maternal effect embryo arrest 59 (.1) Lus10018201 [exp] 70 / 1e-14 AT4G37300 105 / 3e-28 maternal effect embryo arrest 59 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G049800.2 pacid=42766079 polypeptide=Potri.007G049800.2.p locus=Potri.007G049800 ID=Potri.007G049800.2.v4.1 annot-version=v4.1 ATGGTGGGACAGTGGACGATGACTAAACCTAGCCGGAGCGACGAGGTTTTGGATGCAAATCAACAGCTCCAAATTACCAATCAAATTAGAGCTCAGTTTG ATTCTATGGTCCCCAAACGACCTAGCAAGCCCAGCAGAAGTGAATCCGACACCACAACAACACCAACCTCTTCGCTTTCTGAAATTGAACAAGACAATAT TCCTGAGCTCGACAAGCTTCGATCTCTTCAATCTCAATCTCCTAACATGTTCTGCCCTGCCCAGGTTTTATTTTCAGCTGAGGGAGCCAATATGGTGCAA GATGAGTTTGTGGAGACTCAATACTACACAGAGTTGGATTCTATTGACAAGCAACACCACACTACAGGAAGTGGGTTTATAAATGTGGTGAGAGGAGAAG AACATGAAAAAAATGGATATGGAATCCAATTGTCAAGTGCTGCTGCAGGAGGTAAACTAGTCTCTTGTTTCAGAAGCAACCCTGCAACAAACGATTGGAC TCCTAGCCCAGAAGACGATCAGGTGTTTGTTTCATCCAAGCCCAATCGGAGTGAGAGCTGTTAG
AA sequence Show only first row Show all	>Potri.007G049800.2 pacid=42766079 polypeptide=Potri.007G049800.2.p locus=Potri.007G049800 ID=Potri.007G049800.2.v4.1 annot-version=v4.1 MVGQWTMTKPSRSDEVLDANQQLQITNQIRAQFDSMVPKRPSKPSRSESDTTTTPTSSLSEIEQDNIPELDKLRSLQSQSPNMFCPAQVLFSAEGANMVQ DEFVETQYYTELDSIDKQHHTTGSGFINVVRGEEHEKNGYGIQLSSAAAGGKLVSCFRSNPATNDWTPSPEDDQVFVSSKPNRSESC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37300		MEE59	maternal effect embryo arrest ...		Potri.007G049800 [exp]	0	1
AT4G12850	FAR1_related		Far-red impaired responsive (F...		Potri.014G176600 [exp]	3.87	0.6864
AT5G10860		CBSX3	CBS domain containing protein ...		Potri.017G000100 [exp]	4.47	0.6780
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.017G054300 [exp]	4.47	0.7538
AT3G18060			transducin family protein / WD...		Potri.012G049200 [exp]	4.89	0.6542
AT4G16150	CAMTA		calmodulin binding;transcripti...		Potri.010G141700 [exp]	8.36	0.6951
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Potri.009G143700 [exp]	12.32	0.6145
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Potri.017G149800 [exp]	12.84	0.6281
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Potri.004G059000 [exp]	15.42	0.6498	GSK1.2
AT1G49820		MTK1, ATMTK	5-methylthioribose kinase 1, S...		Potri.001G299700 [exp]	20.97	0.6661
AT5G40250			RING/U-box superfamily protein...		Potri.017G072300 [exp]	20.97	0.6109

Compare expression of checked genes

Potri.007G049800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.