Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37370 508 / 7e-178 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37340 504 / 2e-176 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT4G37330 498 / 5e-174 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT4G37360 482 / 1e-167 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT4G37320 480 / 5e-167 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT5G36220 473 / 5e-164 CYP91A1, CYP81D1 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) AT3G28740 469 / 1e-162 CYP81D11, CYP81D1 cytochrome P450, family 81, subfamily D, polypeptide 11, Cytochrome P450 superfamily protein (.1) AT2G23220 468 / 5e-162 CYP81D6 "cytochrome P450, family 81, subfamily D, polypeptide 6", cytochrome P450, family 81, subfamily D, polypeptide 6 (.1) AT2G23190 468 / 2e-161 CYP81D7 "cytochrome P450, family 81, subfamily D, polypeptide 7", cytochrome P450, family 81, subfamily D, polypeptide 7 (.1) AT4G37430 459 / 1e-158 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G006000 [exp] 520 / 0 AT4G37370 526 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G007000 [exp] 489 / 2e-170 AT4G37370 525 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G008200 [exp] 488 / 5e-170 AT4G37370 531 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.008G205200 [exp] 485 / 8e-169 AT4G37370 524 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G007900 [exp] 476 / 3e-165 AT4G37370 524 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.007G049900 [exp] 475 / 5e-165 AT4G37370 490 / 1e-170 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.005G143900 [exp] 473 / 4e-164 AT4G37370 511 / 5e-179 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.005G143800 [exp] 471 / 2e-163 AT4G37370 539 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.005G144000 [exp] 469 / 2e-162 AT5G36220 496 / 6e-173 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020437 [exp] 580 / 0 AT4G37370 630 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10011958 [exp] 491 / 6e-171 AT5G36220 548 / 0.0 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10027614 [exp] 460 / 1e-159 AT4G37370 496 / 6e-174 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10018717 [exp] 439 / 2e-150 AT4G37370 533 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024819 [exp] 430 / 7e-147 AT4G37320 493 / 3e-171 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10024816 [exp] 424 / 2e-144 AT4G37370 506 / 2e-176 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024818 [exp] 421 / 4e-143 AT4G37320 480 / 2e-166 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10018711 [exp] 415 / 4e-141 AT4G37370 441 / 5e-151 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024820 [exp] 409 / 2e-138 AT5G36220 493 / 2e-171 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10024078 [exp] 369 / 8e-123 AT4G37320 437 / 3e-149 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.007G050000.1 pacid=42766090 polypeptide=Potri.007G050000.1.p locus=Potri.007G050000 ID=Potri.007G050000.1.v4.1 annot-version=v4.1 ATGGAAGTCAGAGTATTTTACGTTTCCCTTTCTCTTCTCTTCTTCCTCCTTGCTCTAAAACTTCATCTATCAAGAAAACACAAAAATAGTGCCCTTCCTC CCAGCCCACCTGCCCTTCCAGTTATTGGTCATCTCCATCTCTTAAAACGACGTCCAATGCACCTTACTTTTTACAGCCTTGCTAAAAAATATGGTCCTAT CATCTCTCTACGATTCGGTTCTCGTCTGGTGGTTCTTATATCCTCGCCGTCACCGTTTGAAGAGTTCTTCACTAAAAATGATGTTGTTTTAGCCAACCGT CCGAAATTACTCTTAGGCAAACACCTTGCTTATAACCACACCACCTTACTGCAAGCACCATATGGTGATCATTGGCGCAACCTACGCCGCATTGGTGCTG TAGAGATTTTCTCCACTCATGGTATCAACAAGTTTGTAAGCATTCGAAAAGACGAAATCAAGCAGCTTCTCATCAAACTTTCACATAATTCGCTTCAAAA CTTTGAGCTAACGTTTAATATTATGATGAGAATGGTCGCAGGGAAGAGGTATTATGTGGATGATGTGACTGATGAAGAAGAGGCACGGCAGTTCAGGGAG ATAATGACGGAGGCTGTAACTTTTGCTGGGGCATCGAATCCAGGGGATTTCTTGCCCATATTGAATTGGATAGATGGTGGTGAATTTGAGAAGACAGTGA TAAGACTTGGCAAGAGAATGGACATGTTCTTACAAGGGTTGGTTGATGAACATAAAAGGAAGGAGGATTTAGAGAGTATGAACACCATGATTGGCCACCT TATATCTCTGCAAGTCACACAACCCGAGTATTATACAGATGGGATTATCGAAGGCCTTGTACTGGTAATGCTAGGAGCAGCAATGTCCAACCTACTCAAC AATCCGAACACATTGAAGAAGGCTAGAGATGAATTGGACACCCAAGTTGGAGAAGAATTCTTGCTGGACGAAACCCATCTCTCGAAATTACAATATCTCC AAAATATCATCTCTGAAACCCTACGGTTAAATCCAGCAGCTCCACTTCTGGTTCCTCACGAGTCATCAGAAAGTTGCAGTGTTGGAGGATACAATGTTCC TCGTGACACAATCTTACTGGTTAATGCATGGGCTATACATAGAGATTCTACAGTCTGGGATGATCCAACCAGTTTTAAACCTGATAGATTTGACAACGAA GGAGAGGATCGTAAGCTCATAGCATTTGGGTGCGGTAGAAGGTCGTGTCCTGGGGCAGGCTTAGCACAACGAGTAGTGGGTTCCACGTTGGGGTCATTGA TCCAATGCTTTGAATGGAAAAGGGTCAGTGAGAAGGAAGTTGACATGACAGAAGGAAGAGGGATAACATTGCAGAAAGTAGTGCCTCTGGAGGCCATTTG CAAATCACGTCCTATCATGGATAGGATTTTGTGTTGA
AA sequence Show only first row Show all	>Potri.007G050000.1 pacid=42766090 polypeptide=Potri.007G050000.1.p locus=Potri.007G050000 ID=Potri.007G050000.1.v4.1 annot-version=v4.1 MEVRVFYVSLSLLFFLLALKLHLSRKHKNSALPPSPPALPVIGHLHLLKRRPMHLTFYSLAKKYGPIISLRFGSRLVVLISSPSPFEEFFTKNDVVLANR PKLLLGKHLAYNHTTLLQAPYGDHWRNLRRIGAVEIFSTHGINKFVSIRKDEIKQLLIKLSHNSLQNFELTFNIMMRMVAGKRYYVDDVTDEEEARQFRE IMTEAVTFAGASNPGDFLPILNWIDGGEFEKTVIRLGKRMDMFLQGLVDEHKRKEDLESMNTMIGHLISLQVTQPEYYTDGIIEGLVLVMLGAAMSNLLN NPNTLKKARDELDTQVGEEFLLDETHLSKLQYLQNIISETLRLNPAAPLLVPHESSESCSVGGYNVPRDTILLVNAWAIHRDSTVWDDPTSFKPDRFDNE GEDRKLIAFGCGRRSCPGAGLAQRVVGSTLGSLIQCFEWKRVSEKEVDMTEGRGITLQKVVPLEAICKSRPIMDRILC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.007G050000 [exp]	0	1
					Potri.007G020732 [exp]	2.00	0.9198
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G129300 [exp]	2.44	0.9113
					Potri.002G239451 [exp]	3.16	0.9002
					Potri.010G159650 [exp]	3.74	0.8937
AT1G35830			VQ motif-containing protein (....		Potri.002G094900 [exp]	3.74	0.8660
					Potri.019G129350 [exp]	5.65	0.8764
AT1G70140		ATFH8	formin 8 (.1)		Potri.008G192900 [exp]	7.21	0.8670
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G025425 [exp]	8.48	0.8681
AT5G36930			Disease resistance protein (TI...		Potri.006G284100 [exp]	9.05	0.8150
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.006G033500 [exp]	9.59	0.8458

Compare expression of checked genes

Potri.007G050000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.