Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67320 646 / 0 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT3G49660 110 / 1e-26 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 106 / 4e-24 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT4G02730 103 / 5e-24 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 103 / 2e-23 WD-40 repeat family protein / notchless protein, putative (.1) AT5G25150 103 / 7e-23 TAF5 TBP-associated factor 5 (.1) AT2G26060 100 / 1e-22 EMB1345 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G43770 94 / 1e-20 Transducin/WD40 repeat-like superfamily protein (.1) AT5G56130 92 / 3e-20 THO3, AtTEX1 Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 87 / 7e-19 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G144400 [exp] 772 / 0 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.009G058000 [exp] 115 / 2e-27 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.005G148500 [exp] 108 / 8e-26 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 108 / 2e-24 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G045800 [exp] 107 / 2e-24 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.019G087200 [exp] 99 / 3e-22 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G212800 [exp] 98 / 5e-22 AT2G26060 530 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G263400 [exp] 100 / 9e-22 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.019G096900 [exp] 96 / 2e-21 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024972 [exp] 697 / 0 AT5G67320 819 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10010384 [exp] 462 / 6e-159 AT5G67320 572 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10029493 [exp] 118 / 4e-28 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10007449 [exp] 115 / 9e-27 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10039597 [exp] 112 / 2e-26 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10024447 [exp] 110 / 3e-25 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10021059 [exp] 108 / 1e-24 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 104 / 2e-23 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10039636 [exp] 97 / 5e-22 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 97 / 7e-22 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.007G050100.3 pacid=42766703 polypeptide=Potri.007G050100.3.p locus=Potri.007G050100 ID=Potri.007G050100.3.v4.1 annot-version=v4.1 ATGACTTCAATCACCTCCGTCGAATTGAATTACCTCGTTTTCCGTTACCTTCAAGAATCAGGTTTTACGCATTCAGCTTTTGTTTTAGGATATGAGGCAG GAATTAACAAATGCACCATAGATGGCAATATGGTTCCACCTGGTGCTCTCATTTCTTTTGTACAAAAGGGGCTTCAGTACTTGGAAATGGAAGCGAATTT GAGTAATAGTGATGCAGATGTAGATGAAGATTTCTCATTTTTGCAACCTTTGGATCTTATCACAAAAGATGTGAATGAATTGCGGCAGATAATAAAAGAG AAGAAAAAAAATTTGCGCAAGGATGGAGAGAAGGAGAAGGAGAAGGAGAAAGACAAAGACAAAGACAAAGACAAAGACAAAGAGTTCGAAAGGGAACATG AAAGAGAACGTGCACGAGTGAGAGAGAAGGAAAGACATGAAAGGGAAAAGGAGAATGAAAAGGATAGAGAGAGGTTAGAAAGGGAAAAAGAGCGAGACAA GCAGCATGAGGATAACACTGATAGCAGAATGATTACTGATACAGAAGACAAGCATGAAGAAAATGGGATTTCTGAAGTTGGACCAGAGCCAATGGATATT TCTACAGCGTCAACATCTCAGACATGTGAAATTCCTAGTTCCGATGTGATGATTTTGGAAGGACATACTTCTGAGGTTTGTGCCTGTGCATGGAGTCCAA CAGGATCACTTCTTGCATCAGGTTCTGGAGATTCCACAGCACGAATTTGGACAATAGCTGAGGGGACCTCTAGGTCAGTTGCTCAGAATGGTCCTTTAAA TGTGCTGGTATTGAAGCATGTAAAGGGAAGGACAAATGAGAAAAGCAAAGATGTGACAACACTTGATTGGAATGGTGAGGGAACATTACTTGCAACTGGC TCTTATGATGGGCAGGCGAGAATTTGGAGTACAGACGGTGAACTAAAGACTACATTGAGTAAGCATAAAGGACCCATATTTACTTTGAAGTGGAACAAGA AGGGGGATTATCTGCTAACTGGAAGCTGTGATAAAACAGCAATTGTGTGGGATGTGAGGGCTGAGGAATGGAAACAGCAGTTTGAGTTTCATTCAGGTCC TACACTTGATGTTGACTGGCGCAATAATGTTTCATTTGCAACAAGTTCCACTGACAATATGATATATGTTTGCAAAGTTGGAGAAACGCGCCCTATTAAA ACTTTTGCTGGACATCAGGGCGAGGTTAATTGTGTCAAGTGGGATCCTACAGGTTCATGGTTGGCATCTTGCTCTGATGATATCAGTGCTAAGATATGGA GCATGAAGCAGGAGAAGTATGTTCATGATTTAAGGGAGCATTCTAAGGAGATTTATACTATCAGATGGAGCCCCACTGGACCTGGTACAAACAATCCCAA CCAGCCATTAGTGCTGGCTAGTGCATCATTTGACTCAACAGTGAAGTTATGGGACGTGGAATTTGGGAAACTTCTCTGCAGTTTGAATGGACACAGGGAG CCTGTGTATTCGGTAGCATTTAGTCCTAATGGAGAATACCTGGCAAGTGGATCTCTTGATAGATGCATCAACATTTGGTCATTGAGGGAAGGAAAGATTG TGAAAACATATGCTGGCAACGGGGGAATATTTGAAGTTTGTTGGAATAAGGAAGGTGATAAAATTGCTGCCTGTTTTGCCAACAATACAGTTTGTGTTTT AGATTTCAGAATGTGA
AA sequence Show only first row Show all	>Potri.007G050100.3 pacid=42766703 polypeptide=Potri.007G050100.3.p locus=Potri.007G050100 ID=Potri.007G050100.3.v4.1 annot-version=v4.1 MTSITSVELNYLVFRYLQESGFTHSAFVLGYEAGINKCTIDGNMVPPGALISFVQKGLQYLEMEANLSNSDADVDEDFSFLQPLDLITKDVNELRQIIKE KKKNLRKDGEKEKEKEKDKDKDKDKDKEFEREHERERARVREKERHEREKENEKDRERLEREKERDKQHEDNTDSRMITDTEDKHEENGISEVGPEPMDI STASTSQTCEIPSSDVMILEGHTSEVCACAWSPTGSLLASGSGDSTARIWTIAEGTSRSVAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG SYDGQARIWSTDGELKTTLSKHKGPIFTLKWNKKGDYLLTGSCDKTAIVWDVRAEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKVGETRPIK TFAGHQGEVNCVKWDPTGSWLASCSDDISAKIWSMKQEKYVHDLREHSKEIYTIRWSPTGPGTNNPNQPLVLASASFDSTVKLWDVEFGKLLCSLNGHRE PVYSVAFSPNGEYLASGSLDRCINIWSLREGKIVKTYAGNGGIFEVCWNKEGDKIAACFANNTVCVLDFRM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67320		HOS15	high expression of osmotically...		Potri.007G050100 [exp]	0	1
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Potri.001G289800 [exp]	2.00	0.8763
AT2G16940			Splicing factor, CC1-like (.1....		Potri.004G177000 [exp]	3.46	0.8827
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Potri.007G119300 [exp]	12.36	0.8603	SDG904
AT1G10890			unknown protein		Potri.001G211000 [exp]	12.72	0.8166
AT2G44430			DNA-binding bromodomain-contai...		Potri.009G023100 [exp]	13.52	0.7723	BRD908
AT1G21200	Trihelix		sequence-specific DNA binding ...		Potri.003G204700 [exp]	15.68	0.7569
					Potri.014G015200 [exp]	17.94	0.8461
AT1G20920			P-loop containing nucleoside t...		Potri.005G257400 [exp]	18.86	0.8510
AT5G46550			DNA-binding bromodomain-contai...		Potri.011G077100 [exp]	18.97	0.7730
					Potri.003G148601 [exp]	19.13	0.8476

Compare expression of checked genes

Potri.007G050100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.