Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37380 817 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 516 / 2e-176 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 509 / 3e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 498 / 6e-169 MEF22 mitochondrial editing factor 22 (.1) AT5G40405 491 / 2e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02980 486 / 2e-165 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 481 / 2e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62890 476 / 5e-162 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 479 / 4e-161 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 474 / 3e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G239600 [exp] 622 / 0 AT5G59200 694 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G191200 [exp] 525 / 2e-180 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G168800 [exp] 520 / 1e-178 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 514 / 1e-175 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 515 / 6e-175 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G119000 [exp] 511 / 2e-174 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G005700 [exp] 511 / 2e-174 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G152000 [exp] 511 / 2e-173 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.013G044700 [exp] 506 / 1e-170 AT3G22690 582 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024971 [exp] 957 / 0 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 952 / 0 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 520 / 4e-177 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 512 / 1e-174 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 509 / 7e-174 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000110 [exp] 492 / 2e-172 AT4G37380 413 / 9e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 505 / 5e-172 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 504 / 7e-172 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000706 [exp] 505 / 8e-170 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10040680 [exp] 498 / 4e-168 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.007G050200.2 pacid=42766051 polypeptide=Potri.007G050200.2.p locus=Potri.007G050200 ID=Potri.007G050200.2.v4.1 annot-version=v4.1 ATGTCCTCTACCCCTATCTTCAGTACTCCTCCACCACCACCACCACTACCACACGCCAACACAACCCGCTCCTCCACCACTCTGCACAACCCTCCACCAG AAAAAATCGCAATTTTAATCGACAAATCCAAATCCTTAAACCATCTCAACCAAGTCCACGCCTTTCTCTACCGCCACAATCTCCATGACCACCCAATCCT CAACTTCAAGCTTCAACGTTCTTACTCCTCTCTGGGTCACTTAAACCGCTCTCTTGCACTGTTTAACAAAACCCAAAACCCCAATGTCTTTTTTTATACT TCTATTATTCATGCCCACACTATTCACAATCTACATCACCTAGCACTTCTTTTCTATGTCCAAATGTTGAGTCAAAATGTATTCCCTAATGCATTTACTT TCTCATCGATATTGAAGTCATGCCCGATTGAACCTGCAAAATTGCTACATGGGCAAGCAATAAAATTTGGGTTTGATGCAGAATTGTATGTGAGGACTTG TCTTGTTGACGTGTATGCAAGAGGAGGCGATGTTGTTTCTGCGCGTACGCTGTTTGATGCAATGCCTGAGAAGAGTTTAGTTTCGTTGACAGCGATGATT ACTTGTTATGCTAAGTATGGGATGATTGACGAGGCAAGAGTGTTGTTTGATGGGCTGGAAGAGAGGGATGCCATTTGTTGGAACGTTATGATTGATGGGT ACGCGCAACATGGATTACCTAATGAAGGATTGTTGTTGTTTAGACAAATGTTGAATGCCAAAGTGAGACCGAACGAAGTTACTGTGTTGGCTGTTCTTTC TGCTTGTGGGCAAACTGGGGCTTTGGAGACGGGAAGGTGGGTTCATTCATATATTGAGAATAATGGGATTGGGATTAATGTTCGAGTAGGTACGTCTTTG ATTGATATGTATAGTAAATGTGGGAGTTTGGAGGATGCGCGGTTGGTTTTTGAGAGGATCAGTAACAAGGATGTTGTTGCTTGGAATTCGATGGTTGTTG GGTATGCAATGCACGGATTTAGCCAAGATGCTCTGCGGTTGTTTAAAGAGATGTGTATGATCGGATACCAACCTACAGATATAACGTTTATTGGTGTATT AAATGCTTGTAGTCATGCTGGTTTGGTCAGTGAAGGATGGAAATTTTTCTATTCAATGAAAGATGAATATGGGATTGAACCCAAGGTTGAGCATTATGGG TGTATGGTAAATCTTCTTGGCCGTGCTGGGTATTTAGAAGAAGCGTATGAACTTGTTAAGAACATGGAGATTGATCAGGATCCCGTATTGTGGGGAACTC TGCTTGGGGCTTGCAGGCTCCATGGCAACATTGCCCTGGGAGAGCAAATAGCGGAGTATCTTGTTAGCCAGAATCTTGCAAATTCAGGGACTTATGTTCT TCTTTCTAACATTTATGCAGCAGCTGGCAATTGGGAAGGTGTGGCGAGGGTGAGGACCTTGATGAAAGAGAGTGGGTTTGAGAAAGAGCCTGGGTGTAGC TCGATTGAAGTGAATAACAAGGTGCATGAGTTTTTGGCTGGAGATTTGAGACATCCAAAGAGCAGAGAGATCTATGAAATGTTGGAGGAGATAAATGGCT GGCTTAAAACTCATGGTTATACCCCACAGACAGATATTGTATTACATGACTTGGAGGATGCGCAAAAGGAGCGGTCACTTGGGGTTCACAGTGAGAAACT TGCCCTAGCTTTTGGGCTTATAACAACCAAACCAGGCACTACAATAAAGATCGTAAAGAATCTGAGGGTCTGCGCGGATTGTCATGCTGTGACAAAGTTG ATTTCGAAGATCACCGGACGCAAGGTTGTAATGAGGGATCGAAACCGTTTCCACCACTTTGTAAATGGCTTATGTTCTTGTGGAGACTATTGGTAA
AA sequence Show only first row Show all	>Potri.007G050200.2 pacid=42766051 polypeptide=Potri.007G050200.2.p locus=Potri.007G050200 ID=Potri.007G050200.2.v4.1 annot-version=v4.1 MSSTPIFSTPPPPPPLPHANTTRSSTTLHNPPPEKIAILIDKSKSLNHLNQVHAFLYRHNLHDHPILNFKLQRSYSSLGHLNRSLALFNKTQNPNVFFYT SIIHAHTIHNLHHLALLFYVQMLSQNVFPNAFTFSSILKSCPIEPAKLLHGQAIKFGFDAELYVRTCLVDVYARGGDVVSARTLFDAMPEKSLVSLTAMI TCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSL IDMYSKCGSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYG CMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGFEKEPGCS SIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLHDLEDAQKERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKL ISKITGRKVVMRDRNRFHHFVNGLCSCGDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37380			Tetratricopeptide repeat (TPR)...		Potri.007G050200 [exp]	0	1
AT5G62990		EMB1692	embryo defective 1692, Ubiquit...		Potri.002G233900 [exp]	1.41	0.9856
AT4G18520			Pentatricopeptide repeat (PPR)...		Potri.005G170300 [exp]	2.44	0.9850
AT1G71460			Pentatricopeptide repeat (PPR-...		Potri.019G075400 [exp]	4.58	0.9752
AT1G32580			plastid developmental protein ...		Potri.010G068300 [exp]	5.29	0.9710
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Potri.017G142500 [exp]	6.32	0.9732
AT1G36320			unknown protein		Potri.002G091000 [exp]	6.92	0.9719
AT5G39980			Tetratricopeptide repeat (TPR)...		Potri.017G075700 [exp]	6.92	0.9701
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.010G168800 [exp]	8.36	0.9693
AT3G54090		FLN1	fructokinase-like 1 (.1)		Potri.016G109600 [exp]	8.36	0.9720
AT3G22150			Tetratricopeptide repeat (TPR)...		Potri.006G007800 [exp]	8.48	0.9643

Compare expression of checked genes

Potri.007G050200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.