Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23140 1019 / 0 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G67340 406 / 3e-130 ARM repeat superfamily protein (.1) AT3G54790 347 / 1e-107 ARM repeat superfamily protein (.1.2) AT3G01400 265 / 2e-81 ARM repeat superfamily protein (.1) AT4G16490 260 / 5e-78 ARM repeat superfamily protein (.1) AT3G46510 255 / 4e-74 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G58680 245 / 1e-73 ARM repeat superfamily protein (.1) AT1G23030 245 / 6e-71 PUB11 ARM repeat superfamily protein (.1) AT3G54850 244 / 2e-70 ATPUB14 plant U-box 14 (.1) AT1G71020 229 / 2e-66 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G144700 [exp] 1437 / 0 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G225400 [exp] 395 / 4e-125 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G037700 [exp] 390 / 1e-123 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G118800 [exp] 274 / 1e-84 AT3G01400 521 / 0.0 ARM repeat superfamily protein (.1) Potri.014G016400 [exp] 267 / 7e-82 AT3G01400 557 / 0.0 ARM repeat superfamily protein (.1) Potri.001G238500 [exp] 274 / 6e-81 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.009G029600 [exp] 268 / 7e-79 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G035700 [exp] 263 / 4e-77 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G226500 [exp] 262 / 5e-77 AT3G54850 806 / 0.0 plant U-box 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011514 [exp] 1129 / 0 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 1110 / 0 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10024899 [exp] 381 / 5e-120 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10022919 [exp] 379 / 6e-119 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011516 [exp] 368 / 3e-116 AT2G23140 410 / 5e-134 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10007738 [exp] 282 / 1e-87 AT3G01400 555 / 0.0 ARM repeat superfamily protein (.1) Lus10032023 [exp] 267 / 4e-82 AT2G23140 309 / 1e-98 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10039047 [exp] 259 / 6e-78 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1) Lus10016565 [exp] 256 / 3e-74 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 253 / 5e-73 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.007G051000.8 pacid=42766672 polypeptide=Potri.007G051000.8.p locus=Potri.007G051000 ID=Potri.007G051000.8.v4.1 annot-version=v4.1 ATGGAGATATCATTGTTAGAAGTGCTTCTCAAAACCATCTCTACCTTCTTACATTTATCAAAGGATGATAACATCAGTTCTGATCCAGTTCAGAAGTACT ACCAGAAGGCAGAAGAGATACTCAAGTTGTTGAAGCCAATATTTGATGCCATTGTTGATTCTGAAGTAGCTTCTGATGAAGTGCTTAATAAGGATTTTCT AGAATTAGGTCGATCTGTTGACGAATTGAGGGAGATATTTGAGAGCTGGCAACCATTGTCAAGCAAAGTTTATTTTGTTCTGCAAATTGAATCATTAACA TTGAAGATTCGTAATCTGGGCCTGGATAGTTTTCAGCTATTGAAGTCTTCCCATCAACAACTCCCGGATGAATTAAGTTCATCTTCTCTTGAGAACTGCA TACAGAAAATTAAGCATTCTGTATATGAGCAAACATCATCCATCATTAAAGAAGCTATAAGTGGCCAAGAGGAGGGTGTTGGACCCAGCTCAGAGATCCT GGTGAAAATTGCAGACAGCCTGTGCTTAAGGTCCAATCAGGAGATTTTGATTGAAGCAGTGGCCCTAGAGAAGATTAAGGAGAATGCTGAGCAAGCTGAG AAAACTGCAGAAGCTGAGTTTATTGATCAAATGATTGCACTTGTGACCCACATACATGAACGCCTTGTTCTGATAAAGCAGTCACAGTCATCTAGTCCAG TCCCAATACCTGCTGATTTTTGTTGTCCCCTCTCTCTTGAGTTGATGACGGATCCAGTAATTGTGGCATCAGGGCAAACTTATGAGCGGGCATTCATTAA AAACTGGATTGAACTTGGTCTCACTGTGTGTCCCAAGACACGGCAGACTCTGGCTCACACTAATCTCATACCTAACTACACTGTAAAGGCATTGATTGCA AATTGGTGTGAGTCAAACAATGTGAAGCTTCCTGATCCCATAAAGTCCATGAGCTTCAATCAGCCCTCACCACTTCTTGTGCATGTAGAGTCTATTGCAT CCAGGGATTCACATGTTCTTCCTCATTTGAGGGAAAACCAACCATTGTCTCCCGAGTCAAATCGGTCTGCTGGTTCACCTGGTAGGAGCATGATCTCTTC TAGTGGAATCCATAGAGAGGGAAGTTCTCCACTGCATCCCCGTTCTACTTCTGAGGGTTCCTTGTCAGGTGCAGTTGGAAATGGCCAGGGTTTGGATATT GCAAGAATATCATTAATGAGTTCTGAAGAAAGGTCAGGTAGCTCAGAAGAGAGGTATTTGGATTCAGTTTGCCACCGGTCTGCATCACCATCTAGAAATG AAGTTTCAACTGCTGTTAGAGCTGATGGTCTGCAATCTCAGAACCACAACAGAAGTGCATCAGCCTCCAGTGCACTTACTCATGCAGCTTTTCCTCAAGG AGCATCAGGAGATGCCAATGAATCAACAGAGTTCTCAAACCATTTTACTTCCTACAGCAGTGATACTTCTGGGGAGGTGAAGCCAGAGCCACAGGCATCT TCGACCTTGAACACCCCGCACAGAGAACCTGAGTTCCCATCCTTTTTGGTTGATACACGGTCTCGAAGCCAAACAGCTTGGCGCCGGCCTTCTGATAGGC TTGTGCCAAGGATAGTTTCTTCTCCGGCTATTGAAACAAGAGCTGATCTTGCTGGCATTGAAATGGAAGTTCGGAAGCTGGTTGAGGACTTGAGGAGCAC TTCAATTGATATTCAAAGAGACGCAACAGCTAAACTGAGGCTACTTGCTAAGCACAACATGGATAACCGGATTGTTATAGCAAATTGTGGGTCCATTGGC TTGTTGGTTAATTTGCTCTGCTCAACAGACAAAAAAATCCAGGAAAATGCTGTCACAGCACTTCTTAACTTATCAATAAATGATAACAACAAAACAGCAA TTGCAAATGCAGATGCTATTGAGCCCCTGATTCATGTCCTTGAAACAGGAAGCCCCGAGGCTAAAGAGAACTCAGCTGCCACTCTCTTTAGCCTCTCTGT GATTGAGGATAACAAGGTCAGAATTGGGAGGTCTGGGGCAGTTGGACCACTGGTTGATTTACTGGGTAATGGGACTCCAAGGGGGAAGAAGGATGCAGCC ACAGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGGCCCGAATTGTAGAAGCTGGTGCTGTTAAACATCTTGTGGACTTGATGGACCCGGCAGCTG GGATGGTTGATAAGGCAGTTGCTGTTTTGGCAAATCTTGCGACAATTCCTGAGGGAAGGAATGCCATTGGTCAGGAGGGTGGGATCCCTGTTCTTGTTGA GGTCGTTGAGTTGGGTTCTGTAAGAGGGAAGGAAAATGCAGCCGCTGCTCTCTTGCAGCTGTGCACGAATAGTAGTAGGTTTTGCCACATGGTGCTCCAA GAAGGTGCTGTCCCGCCATTAGTGGCATTGTCTCAATCTGGCACTCCAAGGGCTAAGGAAAAGGCGCAGTCCCTTCTTAGCTACTTCAGAAACCAACGGC ATGGTAATGCTGGAAGGGCTTGA
AA sequence Show only first row Show all	>Potri.007G051000.8 pacid=42766672 polypeptide=Potri.007G051000.8.p locus=Potri.007G051000 ID=Potri.007G051000.8.v4.1 annot-version=v4.1 MEISLLEVLLKTISTFLHLSKDDNISSDPVQKYYQKAEEILKLLKPIFDAIVDSEVASDEVLNKDFLELGRSVDELREIFESWQPLSSKVYFVLQIESLT LKIRNLGLDSFQLLKSSHQQLPDELSSSSLENCIQKIKHSVYEQTSSIIKEAISGQEEGVGPSSEILVKIADSLCLRSNQEILIEAVALEKIKENAEQAE KTAEAEFIDQMIALVTHIHERLVLIKQSQSSSPVPIPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIELGLTVCPKTRQTLAHTNLIPNYTVKALIA NWCESNNVKLPDPIKSMSFNQPSPLLVHVESIASRDSHVLPHLRENQPLSPESNRSAGSPGRSMISSSGIHREGSSPLHPRSTSEGSLSGAVGNGQGLDI ARISLMSSEERSGSSEERYLDSVCHRSASPSRNEVSTAVRADGLQSQNHNRSASASSALTHAAFPQGASGDANESTEFSNHFTSYSSDTSGEVKPEPQAS STLNTPHREPEFPSFLVDTRSRSQTAWRRPSDRLVPRIVSSPAIETRADLAGIEMEVRKLVEDLRSTSIDIQRDATAKLRLLAKHNMDNRIVIANCGSIG LLVNLLCSTDKKIQENAVTALLNLSINDNNKTAIANADAIEPLIHVLETGSPEAKENSAATLFSLSVIEDNKVRIGRSGAVGPLVDLLGNGTPRGKKDAA TALFNLSIFHENKARIVEAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIPVLVEVVELGSVRGKENAAAALLQLCTNSSRFCHMVLQ EGAVPPLVALSQSGTPRAKEKAQSLLSYFRNQRHGNAGRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23140			RING/U-box superfamily protein...		Potri.007G051000 [exp]	0	1
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.002G007800 [exp]	2.00	0.6916
					Potri.009G086900 [exp]	5.47	0.6821
AT5G43100			Eukaryotic aspartyl protease f...		Potri.014G020200 [exp]	8.12	0.6645
AT2G06530		VPS2.1	SNF7 family protein (.1)		Potri.018G065100 [exp]	12.32	0.6546
AT1G59650		CW14	Protein of unknown function (D...		Potri.017G074800 [exp]	15.49	0.6259
AT3G16270			ENTH/VHS family protein (.1)		Potri.001G187000 [exp]	17.02	0.6093
AT1G26810		GALT1	galactosyltransferase1 (.1)		Potri.010G168500 [exp]	18.43	0.5833
AT4G39140			RING/U-box superfamily protein...		Potri.004G158400 [exp]	20.19	0.6064
AT5G16880			Target of Myb protein 1 (.1.2....		Potri.019G050000 [exp]	21.56	0.5909
AT5G28850			Calcium-binding EF-hand family...		Potri.013G047300 [exp]	23.36	0.5784

Compare expression of checked genes

Potri.007G051000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.