Plant FIBer expression Database

Potri.007G051100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G59670 178 / 4e-50 unknown protein
AT4G37440 172 / 2e-48 unknown protein
AT3G50040 114 / 2e-27 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G144800
[exp]
600 / 0 AT3G59670 181 / 6e-51 unknown protein
Potri.013G127100
[exp]
247 / 8e-76 AT3G59670 377 / 2e-125 unknown protein
Potri.019G112201
[exp]
40 / 0.0009 AT3G59670 98 / 7e-25 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001409
[exp]
291 / 1e-93 AT4G37440 155 / 2e-42 unknown protein
Lus10014864
[exp]
283 / 2e-90 AT4G37440 155 / 2e-42 unknown protein
Lus10011519
[exp]
177 / 2e-50 AT4G37440 134 / 8e-35 unknown protein
Lus10027104
[exp]
172 / 1e-48 AT3G59670 244 / 1e-75 unknown protein
Lus10008349
[exp]
170 / 9e-47 AT3G59670 277 / 1e-86 unknown protein
Lus10019305
[exp]
99 / 5e-23 AT4G37440 83 / 4e-18 unknown protein
PFAM info
Representative CDS sequence
>Potri.007G051100.1 pacid=42766139 polypeptide=Potri.007G051100.1.p locus=Potri.007G051100 ID=Potri.007G051100.1.v4.1 annot-version=v4.1
ATGGGTCCTGACTTGGAGATAAAAAGCAAACAGATTGTTGCTGTGGAAGTTTCGGATAGTAAAGAGAATATAAGTGTGCGGCAAGATCCTGAAGATAATA
AGGTCTTGCAATGTGCAAGTAATTGTCAGGACAAAGGCTTTCATGATGATCAAGATAAGGCAGCTGTTGGAAGTGCGGACGTGGAGGTTAATATAATTGA
CTGTACCAATGCCAGTGACAATGAGCAAATTGTAGCTAGATATGAGGATTCGACTGAGAGCATGAGTTCTTTTGGGGACTTGGAATCTGAGACTAAGAGT
GTTTCTTCTGATACTGAAGTTGAGTCACAGTTATTTGTTGGAGGGGGATCGATCTCTATATTTGATGGATATGGTGGAGCATTTCAAATGAGGAGGAAAA
GATTGACAGATCATTGGAGGAGATTTATACGTCCTCTTATGTGGAGATGTAAGTGGGTAGAATTGCAAATTAAGGAATTTCAGTCCCAAGCGCTTAAGTA
TGACAGAGAAATTGCAGAACATGAACGGAGAAAACTATTTGATCATGAAACATTTATGGAAGAAGGTTTTCCTGTGAAGTCACTGCCATTTTCTACTTGT
ATGGAAAGAAAGAAAGCAATGAAGAGAAAGAAAAGAAAGAGATTTGAAGAGACTGCGGATGTAGCATCATATATGTTACAACACAACCTCTTCTCATATT
ATGAAAATAGGAAGTCTGCTATTGATGGTGCTTCTATCGATGATGGTTGCCTTAACCTTGGTGGTGATTTTTCAGCTAAGACAATTAATGGCAATGATGA
GTTTGGATTTCAAGATGGATTGGCGTCTCTTCAGTCAAGTGATAACATCAGTGAACATATTCTTAGACAAATAGAGGTGCTAAAATCGCAAGTACATAAG
TTGAAGGCCAGGGTAGACAAAGTTGCTAGTGAAAATCCTGTGAAATTCTCTTCTGTCAATGCATTGAGCTTACTTGCACCATCTGATGCTTTGACCAGTT
CTGATTGCAATCCAGCTTCAGTTGCCAAAAGGGGAGATAGTACGCCTTCTAGATTGCCACATGCTGTATCTAACATGGGAAATGTTATGCCTGAAACTGC
AGTTTCAAGTCATAGAGAGGCCACCTCTCGATCTGATATGATTGGGAGCACAGGCCTACTGCATGTTGGGGCTTCGTGTGGAAATGCTGAGAAAGGAATT
CTGATACATAATGCTGCAGTGAAAGAGGAGATAGGAAACTCGAAAAAATCCAATAGTGGTGTAACAGAGAAGCCTTGGGGAGTGATGGAAAAGCAAACAA
CCCAAGCTTCAGAACCTGAGCTGCCAAAAGAGATGCTAGTGACTCGTGCGCGTTGCGGTGGGAAATCACTTCCTAAATCCAGGCTCAATGCTTCCAATAA
CAAGAGAAAGCGGGGGAGGAGAAAATAA
AA sequence
>Potri.007G051100.1 pacid=42766139 polypeptide=Potri.007G051100.1.p locus=Potri.007G051100 ID=Potri.007G051100.1.v4.1 annot-version=v4.1
MGPDLEIKSKQIVAVEVSDSKENISVRQDPEDNKVLQCASNCQDKGFHDDQDKAAVGSADVEVNIIDCTNASDNEQIVARYEDSTESMSSFGDLESETKS
VSSDTEVESQLFVGGGSISIFDGYGGAFQMRRKRLTDHWRRFIRPLMWRCKWVELQIKEFQSQALKYDREIAEHERRKLFDHETFMEEGFPVKSLPFSTC
MERKKAMKRKKRKRFEETADVASYMLQHNLFSYYENRKSAIDGASIDDGCLNLGGDFSAKTINGNDEFGFQDGLASLQSSDNISEHILRQIEVLKSQVHK
LKARVDKVASENPVKFSSVNALSLLAPSDALTSSDCNPASVAKRGDSTPSRLPHAVSNMGNVMPETAVSSHREATSRSDMIGSTGLLHVGASCGNAEKGI
LIHNAAVKEEIGNSKKSNSGVTEKPWGVMEKQTTQASEPELPKEMLVTRARCGGKSLPKSRLNASNNKRKRGRRK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G59670 unknown protein Potri.007G051100
[exp]
0 1
AT3G27700 C3HZnF zinc finger (CCCH-type) family... Potri.017G072100
[exp]
2.23 0.8402
AT2G23460 ATXLG1, XLG1 extra-large G-protein 1 (.1) Potri.007G035200
[exp]
7.41 0.7880 Pt-XLG.2
AT1G61040 VIP5 vernalization independence 5, ... Potri.004G039500
[exp]
11.13 0.7965
AT1G52520 FAR1_related FRS6 FAR1-related sequence 6 (.1) Potri.003G031400
[exp]
11.13 0.7881
AT4G18160 KCO6, ATTPK3, A... Ca2+ activated outward rectify... Potri.011G079100
[exp]
15.32 0.7317 KCO2.1
AT5G58020 unknown protein Potri.006G186900
[exp]
18.33 0.7695
AT2G16770 bZIP bZIP23 Basic-leucine zipper (bZIP) tr... Potri.003G204400
[exp]
19.07 0.7442
AT3G07565 Protein of unknown function (D... Potri.017G023300
[exp]
21.74 0.7743
AT1G06230 GTE4 global transcription factor gr... Potri.019G090700
[exp]
22.18 0.7963
AT5G05230 RING/U-box superfamily protein... Potri.019G058300
[exp]
27.96 0.7550

Potri.007G051100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.