Plant FIBer expression Database

Potri.007G051200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G37445 160 / 6e-51 unknown protein
AT1G64850 44 / 1e-05 Calcium-binding EF hand family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G072600
[exp]
46 / 1e-06 AT1G64850 250 / 3e-86 Calcium-binding EF hand family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001408
[exp]
205 / 2e-68 AT4G37445 214 / 6e-72 unknown protein
Lus10010653
[exp]
44 / 1e-05 AT1G64850 245 / 3e-84 Calcium-binding EF hand family protein (.1)
Lus10013613
[exp]
44 / 1e-05 AT1G64850 244 / 3e-84 Calcium-binding EF hand family protein (.1)
PFAM info
Representative CDS sequence
>Potri.007G051200.1 pacid=42765905 polypeptide=Potri.007G051200.1.p locus=Potri.007G051200 ID=Potri.007G051200.1.v4.1 annot-version=v4.1
ATGGGGATGATCATGAGTTTCATGGGAAAAGGGCTGCCCATTCCTTCAACACAGATGCCGAGTTATGTGATGGGATCACTCTATAAGCAATTTGTGGACA
AAAATATCAAGACATTCGATGAATTCCATGTTGCTGTTCTTGAAATCTTCAACACATTCAACTCGTCATTACCTGGAAAACATTATGATGTGCCCTCGAG
GAAGGATGTAGAGGCTGGTTACAATGATTGGAGAGCAGCTCCAGAGTTAGAAAAGAAGGAAATGTTTATCAATTTCATGAAGGAAAAATTAAACACTGGC
AAGTTAGATGACTCTACCTTTATCATTGGGCTAGCAACACCTCCAGCAGCCATGGCTGCTAAAAGAGCAGGAGAGAATGTGCCCCAGTTAGGGTTTATCA
AGGCCATCCCTGATGTCATCTTTGTGCCATCCGCAACGATACTCGCCCTTGTCTCAGCTAAGCTCACTAAAAGGATGCTACAAGGAAGCCCTATAGCATC
TTGA
AA sequence
>Potri.007G051200.1 pacid=42765905 polypeptide=Potri.007G051200.1.p locus=Potri.007G051200 ID=Potri.007G051200.1.v4.1 annot-version=v4.1
MGMIMSFMGKGLPIPSTQMPSYVMGSLYKQFVDKNIKTFDEFHVAVLEIFNTFNSSLPGKHYDVPSRKDVEAGYNDWRAAPELEKKEMFINFMKEKLNTG
KLDDSTFIIGLATPPAAMAAKRAGENVPQLGFIKAIPDVIFVPSATILALVSAKLTKRMLQGSPIAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G37445 unknown protein Potri.007G051200
[exp]
0 1
AT1G60500 DRP4C Dynamin related protein 4C (.1... Potri.013G120000
[exp]
2.82 0.9693
AT3G01680 SEOR1, SEOb Sieve-Element-Occlusion-Relate... Potri.001G340200
[exp]
3.74 0.9596
AT4G24250 ATMLO13, MLO13 MILDEW RESISTANCE LOCUS O 13, ... Potri.001G078800
[exp]
5.00 0.9570
AT3G01680 SEOR1, SEOb Sieve-Element-Occlusion-Relate... Potri.001G340500
[exp]
6.70 0.9584
AT3G01680 SEOR1, SEOb Sieve-Element-Occlusion-Relate... Potri.012G090400
[exp]
6.92 0.9569
AT5G51160 Ankyrin repeat family protein ... Potri.014G050700
[exp]
9.16 0.9571
AT3G18670 Ankyrin repeat family protein ... Potri.005G057900
[exp]
9.16 0.9550
AT5G45480 Protein of unknown function (D... Potri.016G012400
[exp]
9.38 0.9505
AT3G01680 SEOR1, SEOb Sieve-Element-Occlusion-Relate... Potri.001G340400
[exp]
11.66 0.9549
AT1G54400 HSP20-like chaperones superfam... Potri.019G037700
[exp]
12.24 0.9520

Potri.007G051200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.