Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34280 542 / 0 transducin family protein / WD-40 repeat family protein (.1) AT5G08390 61 / 4e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 59 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 59 / 1e-08 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 59 / 2e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 44 / 0.0004 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G33340 44 / 0.0005 MAC3B MOS4-associated complex 3B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G297600 [exp] 858 / 0 AT4G34280 784 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.009G092500 [exp] 854 / 0 AT4G34280 775 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.010G255400 [exp] 56 / 7e-08 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 56 / 8e-08 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 54 / 4e-07 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G148500 [exp] 45 / 0.0002 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G197700 [exp] 44 / 0.0005 AT5G05970 826 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.014G135600 [exp] 43 / 0.0007 AT2G47990 614 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 42 / 0.001 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026603 [exp] 828 / 0 AT4G34280 777 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10013890 [exp] 822 / 0 AT4G34280 758 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10018458 [exp] 55 / 2e-07 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 55 / 2e-07 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10013452 [exp] 55 / 3e-07 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10041007 [exp] 54 / 3e-07 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039636 [exp] 49 / 1e-05 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 47 / 4e-05 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 43 / 0.0006 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G051500.1 pacid=42766681 polypeptide=Potri.007G051500.1.p locus=Potri.007G051500 ID=Potri.007G051500.1.v4.1 annot-version=v4.1 ATGGATGTCTCCAGCTTACAATCTCGGTACCTTGATTCTTGCAAGAAGCATGAAGTGCTACCCAACTCTGCAGTTTTGTCATGGTTTTATAAGGCTGAAA TCCAGAAGTCCGAACTAGGGAAGTGCAGCATTAAGTTCTTTCTGAATCAGCTATGTAATGCTGATATTTATCCCCTGATTGATGTGTTCCTGGCAATAGA CTCTTCTGATGTTGATGCAGTCGACATACTTCATGAATCACCTTGCAATTTCAATGAAGAATATGTTATGCCTTTGTTGCAGACTATCAATCTGAAACTC CGAGTAGTTGATCTCCATGACATGTCCCCGGAAGAGAACTTTTTGCAGAATTTGTGTCATCATGGCCTAGCGTGTCATATTCTAAACATGAGGTCTACTC ATATCCAAAAGCTCAACATGGCTGGAACATTTATGCAACTACACACCTTGAATTTGGATTTTTGCACTTCAATTGGTAGTTTGGATAAAGACTGTTTTTC TTGCATGCCAAGTCTGATGCGTCTCTCAATGTGTGAGACTAGGGTAGCAAATCTCTGGACAACCACTGCTGCTCTATCAAAACTTCCTTCCTTAGTAGAA CTACGGTTCCAAAATTGCTTATGTTGCAAGGATACTGGACCATGTCCTGCATCGTTTGGTGACAAAGCAAGAATTGCATTTGAGAAACTTGGTTCAGCAC CATTGAATATGTGTCTATCCAGTGAGACATCATCTATCAGCATTAGAGATGCTACATTTCAAGGTTTCCATGCTAAAGAGAATTGCGGGGACTTACTTTC TCTCACAGGTTCAGCTTTGATCAAGGAAGGGTCTGGAAAATTTGATAATTTATCGCATATCAGTAAAGTTGAAATTTCAAGCTGCCTTCAGAGAGTAGGT TCAATAGAAATATCATCTGATTTCCCACCCAATTTGAATGGACTATCAAATTTGGAAAACAAGATTACAGACAAAGAGGAGATCCTTGCAAGAGCACATA TGTGGGACTTGAAGAATGGCCGCCCTACCTCATTAAAGAACTATATTTCACATCATCCTTCACCCATTTGCTTTGAGAAACATTATAGGGAATACATGGT TGCTTTGTTGCCTCGTTTGGAGGTTTTAGATAATTTTTCCATTACAAAGATGGACAGAGAAATGGGAAGAACTATTTTTTCAAAATACTATGAGTACTTA CCATATAAACGACAGAACAAACAAAGTGTTGTTACTGTTCTGCAGAAGCGTGAGATGGGAACAACGGGTGCTTCCTGCCCAAATTTCTCAAAGTTCAAGC AATCATGCCATTATGGAAAGAGTCCATGTCACTTCTCAAGGTCTCTTACCGCTGCCAAACTTGGGTCTGCTGCATGGCCTTTGTTGCATCCTTTGCACAC CTTTAGCCATATATATAAAGAAGGAAGTAAGAGGCTTCGTGCAAGGCAGTTTGAATACCATCCATCTGATTCTCGTCTGATGGTTTATGGAACTCTTGAT GGTGAAGTTGTTGTAATCAATCATGAAAGTGGGAAGCTAGTTGGTTATGTTCCATCTGCTAACAACATGAACAGCGTTTTGGGTCTCTGTTGGCTCAAGA AGTATCCTTCAAAGCTGCTTGCTGGTTCTGATAATGGTTGCTTGAAGTTGTTTGACATCAGTCATATACCGCCAATAGTCAGTGATGTAAATTGCAGTGC TGGTGTGGTCACTTTTGATGACTTTGACCAATTGACTTCTGTTCATGTCAATTCTGGAGATGATCAGTTTTTGGCTAGCGGGTACTCAAAAGATGTTGCT CTATATGACATCTTTAGTGGAAAACGTTTACATCTATTTACTAATATGCATCGAGAACCCATTAATGTCGTGAAATTTGCACACCATTCCCCCTTCTTGT TTGCCACTTCCTCATTCGACCATGATGTCAAGCTGTGGGATTTGAGACAGAAACCACAGTGGCCATGCTATACAGCATCAAGCTCAAGTGGAAATGTGAT GGTTTGCTTTTCACCAGATGATCGCTATCTGCTTGTATCAGCTGTTGATAATGAGGTCAAGCAACTTCTGGCAGTAGATGGGAGGCTTCACATGGATTTC AAGATAGCTTCAACAGGAAGTGCTCATAACTATACCCGCTCCTACTACATTAATGGAAGTGACTACATCATTAGTGGAAGTTGTGATGAAAATGTTGTCC GAATCTGTTGTACTCAAACTGGAAGGCGACTTAGGGACTTTTATCTGGAGGATGTGGAATCTGGGAATTCTCTGTTTGTTCAATCCTTAAGGGGTGATCC TTTCAGACTTTTCCACATGAGTGTGTTAACAGCCTCTAAACGTCCATGTTCTAAGTGGGAAATCATCAAGGTCAATTTACTAGCTTCCAGCCATGGCACC GAAGAGCATTCTCACGGTCAAAACATCCGATCCACCTTCCTGGGAGGTTGA
AA sequence Show only first row Show all	>Potri.007G051500.1 pacid=42766681 polypeptide=Potri.007G051500.1.p locus=Potri.007G051500 ID=Potri.007G051500.1.v4.1 annot-version=v4.1 MDVSSLQSRYLDSCKKHEVLPNSAVLSWFYKAEIQKSELGKCSIKFFLNQLCNADIYPLIDVFLAIDSSDVDAVDILHESPCNFNEEYVMPLLQTINLKL RVVDLHDMSPEENFLQNLCHHGLACHILNMRSTHIQKLNMAGTFMQLHTLNLDFCTSIGSLDKDCFSCMPSLMRLSMCETRVANLWTTTAALSKLPSLVE LRFQNCLCCKDTGPCPASFGDKARIAFEKLGSAPLNMCLSSETSSISIRDATFQGFHAKENCGDLLSLTGSALIKEGSGKFDNLSHISKVEISSCLQRVG SIEISSDFPPNLNGLSNLENKITDKEEILARAHMWDLKNGRPTSLKNYISHHPSPICFEKHYREYMVALLPRLEVLDNFSITKMDREMGRTIFSKYYEYL PYKRQNKQSVVTVLQKREMGTTGASCPNFSKFKQSCHYGKSPCHFSRSLTAAKLGSAAWPLLHPLHTFSHIYKEGSKRLRARQFEYHPSDSRLMVYGTLD GEVVVINHESGKLVGYVPSANNMNSVLGLCWLKKYPSKLLAGSDNGCLKLFDISHIPPIVSDVNCSAGVVTFDDFDQLTSVHVNSGDDQFLASGYSKDVA LYDIFSGKRLHLFTNMHREPINVVKFAHHSPFLFATSSFDHDVKLWDLRQKPQWPCYTASSSSGNVMVCFSPDDRYLLVSAVDNEVKQLLAVDGRLHMDF KIASTGSAHNYTRSYYINGSDYIISGSCDENVVRICCTQTGRRLRDFYLEDVESGNSLFVQSLRGDPFRLFHMSVLTASKRPCSKWEIIKVNLLASSHGT EEHSHGQNIRSTFLGG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34280			transducin family protein / WD...		Potri.007G051500 [exp]	0	1
AT5G50990			Tetratricopeptide repeat (TPR)...		Potri.012G109300 [exp]	2.00	0.7993
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Potri.009G106900 [exp]	2.44	0.7797	OST1.1
AT5G52230		MBD13	methyl-CPG-binding domain prot...		Potri.012G138300 [exp]	2.82	0.7851	MBD912
AT5G53220			unknown protein		Potri.015G022500 [exp]	2.82	0.8030
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Potri.006G205600 [exp]	6.70	0.7823
AT4G32440			Plant Tudor-like RNA-binding p...		Potri.002G046800 [exp]	8.94	0.7303
AT5G05700		ATATE1, DLS1, A...	DELAYED LEAF SENESCENCE 1, arg...		Potri.010G190100 [exp]	10.39	0.7538
AT4G23840			Leucine-rich repeat (LRR) fami...		Potri.001G092000 [exp]	11.09	0.7863
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Potri.007G093400 [exp]	16.94	0.7739
AT1G51120	AP2_ERF		AP2/B3 transcription factor fa...		Potri.018G109201 [exp]	18.00	0.7685

Compare expression of checked genes

Potri.007G051500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.