Plant FIBer expression Database

Potri.007G051600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G144900
[exp]
42 / 0.0001 AT4G37450 / arabinogalactan protein 18 (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.007G051600.1 pacid=42765023 polypeptide=Potri.007G051600.1.p locus=Potri.007G051600 ID=Potri.007G051600.1.v4.1 annot-version=v4.1
ATGGATCGGAATGGCATCCTTGGTTGGACACTGATTTGCGTCCTTGTGGCCGGTGTCGGTGGCCAAGCACCGGCTGCGACGCCGACATCAACTCCGGCGA
CTCCAACAACTCCTTCCGTACCATTAGCTGCACCTGCTAAAGCACCTGCAAAACCTACAACGCCAGCACCCGTATCATCACCACCGGCGGTAACACCAGT
AGCATCTTCACCGAAACAGACTGTTCCAACTCCAGTGGCGACGCCATTGGCTACACCACCTCCAGCCGTGACTCCAGTTAGCTCCCCACCGGCTCCGGTT
CCTGTTAGCTCTCCACCAGAAAAATCTCCTCCGTCTCCAGTGCCTGTTGCTCCACCGACAAGCTCGCCTGTGGCAGCACCGACAGCAGAGGTCCCTGCTC
CTACTCCGAGTAAAAAGAAGCCAAAGAAGGCACCGGCTCCTGGTCCAGCATTGTTGAGCCCACCCGCGCCACCAACGGAGGCTCCTGGACCTAGCGCAGA
ATCCATGTCTCCTGGTTCTATCGCTGACGACAGTGGAGCGGGAAGAACAAGATGCTTTCAGAAGATAGCAGGAGGTTTGGCATTGGGATGGGGTCTGCTT
GCTTTGATCTTCTAG
AA sequence
>Potri.007G051600.1 pacid=42765023 polypeptide=Potri.007G051600.1.p locus=Potri.007G051600 ID=Potri.007G051600.1.v4.1 annot-version=v4.1
MDRNGILGWTLICVLVAGVGGQAPAATPTSTPATPTTPSVPLAAPAKAPAKPTTPAPVSSPPAVTPVASSPKQTVPTPVATPLATPPPAVTPVSSPPAPV
PVSSPPEKSPPSPVPVAPPTSSPVAAPTAEVPAPTPSKKKPKKAPAPGPALLSPPAPPTEAPGPSAESMSPGSIADDSGAGRTRCFQKIAGGLALGWGLL
ALIF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G37450 ATAGP18, AGP18 arabinogalactan protein 18 (.... Potri.007G051600
[exp]
0 1
AT5G51750 ATSBT1.3 subtilase 1.3 (.1) Potri.015G133800
[exp]
2.00 0.8795
AT3G25860 PLE2, LTA2 PLASTID E2 SUBUNIT OF PYRUVATE... Potri.010G126600
[exp]
4.89 0.8603
AT1G65290 MTACP2 mitochondrial acyl carrier pro... Potri.013G084500
[exp]
7.48 0.8709
AT3G22110 PAC1 20S proteasome alpha subunit C... Potri.016G015400
[exp]
9.27 0.8829
AT1G19580 GAMMACA1 ,GAMMA... gamma carbonic anhydrase 1 (.1... Potri.005G229000
[exp]
12.72 0.8779 APFI.2
AT4G23820 Pectin lyase-like superfamily ... Potri.003G139100
[exp]
15.49 0.8501
AT2G36830 TIP1;1, GAMMA-T... TONOPLAST INTRINSIC PROTEIN 1;... Potri.006G121700
[exp]
16.27 0.8653 Pt-TIP2.7
AT5G65020 ANNAT2 annexin 2 (.1.2) Potri.007G092500
[exp]
17.23 0.8536 ANN1.2
AT2G26110 Protein of unknown function (D... Potri.018G053000
[exp]
21.07 0.8336
AT5G15350 AtENODL17 early nodulin-like protein 17 ... Potri.003G183300
[exp]
21.97 0.8421

Potri.007G051600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.