Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33920 461 / 7e-163 Protein phosphatase 2C family protein (.1) AT3G51370 348 / 2e-118 Protein phosphatase 2C family protein (.1.2) AT5G66080 344 / 8e-117 Protein phosphatase 2C family protein (.1) AT5G06750 333 / 1e-112 Protein phosphatase 2C family protein (.1.2.3) AT3G55050 332 / 5e-112 Protein phosphatase 2C family protein (.1.2) AT3G12620 330 / 2e-111 Protein phosphatase 2C family protein (.1.2) AT4G38520 325 / 5e-109 Protein phosphatase 2C family protein (.1.2) AT3G17090 323 / 2e-108 Protein phosphatase 2C family protein (.1.2) AT5G02760 296 / 4e-98 Protein phosphatase 2C family protein (.1) AT1G07160 115 / 7e-29 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G297200 [exp] 500 / 3e-178 AT4G33920 563 / 0.0 Protein phosphatase 2C family protein (.1) Potri.009G091600 [exp] 489 / 8e-174 AT4G33920 561 / 0.0 Protein phosphatase 2C family protein (.1) Potri.009G137400 [exp] 341 / 3e-115 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G108500 [exp] 340 / 4e-115 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G177100 [exp] 338 / 2e-114 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G045600 [exp] 335 / 4e-113 AT5G06750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.007G061100 [exp] 333 / 2e-112 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G146700 [exp] 333 / 2e-112 AT3G17090 554 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.006G192600 [exp] 328 / 1e-110 AT5G06750 572 / 0.0 Protein phosphatase 2C family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013896 [exp] 480 / 2e-170 AT4G33920 554 / 0.0 Protein phosphatase 2C family protein (.1) Lus10002110 [exp] 459 / 2e-161 AT4G33920 533 / 0.0 Protein phosphatase 2C family protein (.1) Lus10011521 [exp] 434 / 2e-152 AT4G33920 483 / 2e-171 Protein phosphatase 2C family protein (.1) Lus10019302 [exp] 430 / 9e-151 AT4G33920 472 / 4e-167 Protein phosphatase 2C family protein (.1) Lus10005054 [exp] 343 / 4e-116 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10027825 [exp] 343 / 5e-116 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10041861 [exp] 340 / 6e-115 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10021056 [exp] 338 / 2e-114 AT5G06750 515 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10004170 [exp] 335 / 3e-113 AT5G06750 518 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10025076 [exp] 335 / 3e-113 AT4G38520 609 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.007G051900.1 pacid=42766159 polypeptide=Potri.007G051900.1.p locus=Potri.007G051900 ID=Potri.007G051900.1.v4.1 annot-version=v4.1 ATGTGTACAAGGCCATTAATGAGATGTTTACGAGGAGAGGGTGGTGGAGATGGGCTATTATGGCATACGGACTTGAAGTCTTATGCTTGTGGAGATTATT CAATTGCTGTGGTTCAAGCTAACTCCTTGCTTGAGGACCAGGGACAAGTGTTCACTTCTCCTTCTGCTACTTATGTTGGTGTTTATGATGGCCATGGCGG CCCTGAGGCTTCTCGCTTTCTCACTCACCATTTGTTCCCTTTCCTCCATAAGTTTGCAACAGAACAAGGAGGGTTATCTTCAGAGGCGATAAGAAAGGCA TTTGATGCTACAGAAATGGAATTCTTACATTTTGTAAAGCAATCATGGAGAGCTCGGCCTCAGATGGCATCTGTGGGTTCTTGCTGCCTTGTTGGGGCAA TATCAAATGATGTTTTATATGTGGCAAATCTCGGGGACTCGAGAGTAGTGCTTGGTAGAAAAGTATCTGAAGGCAAGGAAAATAGTGCAGTGGTGGCAGA AAGGTTAACTACTGATCACAATGTCAGCGATGAGGAGGTGAGGAAGGAGGTGGAGGCACTCCATCCTGACGATGCACATATTGTGGTTTATACTCAAGGA GTTTGGCGGATAAAGGGCATAATTCAGGTTTCAAGATCAATAGGAGACATCTATTTAAAGAAACCTGAGCTCAACAGAGATCCTCTTTTTCAGCCATTTG GATTTCCTTTTCCTTTAAAAAGGCCTGTGATGACGGCAGAGCCATCAATACTGATGAGAAAGCTAAAGCCACAAGACTTGTTCTTGATATTTGCATCGGA TGGTCTTTGGGAGCAAATGAGTGACAAAACAGCCGTCGATATAGTTTCGAGAAGCCCCCGATTTGGAATAGCAAAGCGATTGGTGAGAGCTGCCATCCAG GAGGCTGCAAGGAAAACAGAAATGACATATGATGATATAAAAAGAATTGGAAGAGGAGGGAGACGCCAAATCCACGATGATATCACTGTCATTGTGGTGT ATCTAGATGATCCACTAGGTTCTTCAAATGGTAGATTGGCTCATAGTCTTGTTGACTACACATGCTCCCCTGTTGATATCTTCTCATTGAACGAAGATGA AGCCCAAGACTAG
AA sequence Show only first row Show all	>Potri.007G051900.1 pacid=42766159 polypeptide=Potri.007G051900.1.p locus=Potri.007G051900 ID=Potri.007G051900.1.v4.1 annot-version=v4.1 MCTRPLMRCLRGEGGGDGLLWHTDLKSYACGDYSIAVVQANSLLEDQGQVFTSPSATYVGVYDGHGGPEASRFLTHHLFPFLHKFATEQGGLSSEAIRKA FDATEMEFLHFVKQSWRARPQMASVGSCCLVGAISNDVLYVANLGDSRVVLGRKVSEGKENSAVVAERLTTDHNVSDEEVRKEVEALHPDDAHIVVYTQG VWRIKGIIQVSRSIGDIYLKKPELNRDPLFQPFGFPFPLKRPVMTAEPSILMRKLKPQDLFLIFASDGLWEQMSDKTAVDIVSRSPRFGIAKRLVRAAIQ EAARKTEMTYDDIKRIGRGGRRQIHDDITVIVVYLDDPLGSSNGRLAHSLVDYTCSPVDIFSLNEDEAQD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33920			Protein phosphatase 2C family ...		Potri.007G051900 [exp]	0	1
AT1G66920			Protein kinase superfamily pro...		Potri.017G116955 [exp]	4.24	0.9345
AT1G18980			RmlC-like cupins superfamily p...		Potri.015G068200 [exp]	4.89	0.9327
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.007G075000 [exp]	5.91	0.9271
AT5G61640		PMSR1, ATMSRA1	ARABIDOPSIS THALIANA METHIONIN...		Potri.012G091100 [exp]	6.00	0.9188	Pt-PMSR1.2
AT3G22370		AtHSR3, ATAOX1A...	hyper-sensitivity-related 3, a...		Potri.015G019800 [exp]	6.16	0.9345
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Potri.012G028101 [exp]	6.70	0.9256
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Potri.003G023000 [exp]	10.00	0.9072
AT1G34300			lectin protein kinase family p...		Potri.013G115700 [exp]	10.00	0.9137
AT1G25390			Protein kinase superfamily pro...		Potri.010G121400 [exp]	10.95	0.9248
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.015G064100 [exp]	11.00	0.9212

Compare expression of checked genes

Potri.007G051900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.