Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37460 1332 / 0 SRFR1 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G04240 70 / 8e-12 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11540 59 / 2e-08 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G42810 50 / 6e-06 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT1G62740 48 / 5e-05 Hop2 Hop2, stress-inducible protein, putative (.1) AT4G08320 47 / 5e-05 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G12400 47 / 6e-05 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT4G22670 46 / 0.0001 ATHIP1, TPR11 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) AT2G32450 46 / 0.0001 Calcium-binding tetratricopeptide family protein (.1) AT2G42580 44 / 0.0006 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G025600 [exp] 69 / 2e-11 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G051400 [exp] 67 / 6e-11 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G208900 [exp] 60 / 8e-09 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G075700 [exp] 59 / 1e-08 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G141800 [exp] 50 / 1e-05 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.004G080800 [exp] 49 / 2e-05 AT5G17270 909 / 0.0 Protein prenylyltransferase superfamily protein (.1) Potri.005G234900 [exp] 48 / 4e-05 AT1G05150 1239 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Potri.002G027900 [exp] 48 / 5e-05 AT1G05150 1226 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Potri.007G091200 [exp] 47 / 6e-05 AT5G65160 570 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001406 [exp] 1490 / 0 AT4G37460 1271 / 0.0 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014863 [exp] 202 / 1e-59 AT4G37460 202 / 1e-60 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004779 [exp] 67 / 5e-11 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003113 [exp] 67 / 5e-11 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017009 [exp] 59 / 3e-08 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003576 [exp] 58 / 4e-08 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021336 [exp] 58 / 5e-08 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10010627 [exp] 49 / 2e-05 AT2G32450 1148 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10025656 [exp] 49 / 2e-05 AT4G08320 379 / 9e-130 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018179 [exp] 49 / 2e-05 AT4G08320 389 / 9e-134 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.007G052200.4 pacid=42765827 polypeptide=Potri.007G052200.4.p locus=Potri.007G052200 ID=Potri.007G052200.4.v4.1 annot-version=v4.1 ATGGCATCAGCAATCTCCGAGCGAGTTGAGCTCGCTAAACTCTGTAGCTCTCGAGACTGGTCGAAAGCAATTCGAGTTCTCGACTCGCTCCTTGTTCAGT CTTGCGCTATTCAAGATATCTGCAATAGAGCGTTTTGTTACAGTCAATTAGAGCTACACAAGCATGTGATTAAGGACTGTGATAGAGCGCTCCAGCTAGA CCCTACGCTTCTTCAAGCTTATATTCTCAAAGGTCGTGCATTTTCATCCCTAGGAAGGAAAGATGATGCTCTTTTGGTGTGGGAACAAGGCTATGAACAT GCTCTACATCAATCTGCAGATCTAAAGCAGTTGCTAGAACTGGAGGAGCTCTTGAAGTTTGCAAAACAAGACAGGAGTGCTGGTTGTGAAACCCATGTCG TTGAATCTAGATTGTCTATGTATGCATCTGAATCTCAACCTCATAGCAAATCAGATGAAACTTCTAAGCACCAAAATAAATTGAGTGACATCTCTAATTT ATGCAGTGGGTCAAGGAATGTACTGGGGATCCATAGCAAGTCTGGAGATAATTTTGAGATACACAAGGGGATAAGTGATGAAGTTGGAAGGTCACTTAAG CTTGTTCCTGAATCAGGATGTCATACCAATGAAAAATCTAGTGAAACCAGTAAAAATCCCAGTAAAGCGAGTGATAAATCTGAGTTGTGCAGTGAGCTAA GGGATGCTCCTGAGATCTGCTGTAAATCTGGGGATAATTTTGACATGGATAATGGGCTAAGTGATAAAGCTGAAGGAAATCAAAAGCCTGGTATCCTAGT GAATGATAATCATGATATTCTTGATTTGCCAAATCATGTTTCTGAATCTTGTAGTGGTGTAAGCAATGCATCGGAACTATCCAGTAGGTTATCTATGATA CCTGGCAACTTAGGAGATACAAGTGAAATTCTGAGCAAGTCGAGTAATAAAGTGAACATGCATAATGAAGTAACTGATGAAACCAAAGGAAATAAAAAAT TATGTGTTACTAGGATTTCAAAGACCAAGTCCATAAGTGTAGATTTTCGACTGTCAAGGGGTATAGCACAGGTTAATGAAGGAAAATATGCTACTGCCAT ATCTATTTTTGACCAGATACTGAAAGAGGACCCCACTTATCCTGAGGCACTTATAGGAAGAGGGACAGCACGTGCATTCAAAAGAGAACTAGGATCTGCT ATTGCTGATTTTTCAAAGGCTATAGAATCAAACCCATCAGCTGGTGAGGCATGGAAGCGGAGAGGGCAGGCTCGAGCTGCCTTAGGGGAATCTGCAGAGG CCATTAACGACTTGACTAAGGCATTGGAGTTTGAGCCAAACTCTGCAGATATCTTGCATGAAAGAGGAATTGTTAGTTACAAGTTTAAGGATTTTGATGC TGCTGTTGAAGACCTTTCTGCATGTGTGAAGCTTGATATGGATAACATGTCTGCCTACACATATTTAGGTTTGGCATTATCTTCAATTGGAGAATATAAA AAGGCAGAGGAGGCACATCTAAAGGCAATCCAACTTGATCGCAGTTTTCTTGAGGCATGGGCTCATCTAACCCAGTTCTATCAAGATATGGCAAACTCAA CAAAAGCTTTAGACTGCATCAATCAAGTTCTCCAAATTGACTCAAGGTTTGCAAAAGCATATCATTTGCGTGGGCTGCTGCTTTATGGAATGGGTGAACA CAGGAAAGCCATCAAGGATTTATCAATTGGGCTGAGCATTGAAAATGCAAACATAGAGAGCTTATATTTACGAGCATCTTGCTATCATGCTATCGGAGAA TATGGAGAGGCGGTTAAAGATTATGATGCTACACTTGATTTGGAACTAGACTCAATGGAGAAGTTTGTGCTCCAATGCTTGGCCTTCTATCAGAAAGAAA TTGCTTTGTACACAGCTTCAAAAATCAACAGTGAGTTCTGCTGGTTTGACATTGATGGAGATATTGATCCTCTGTTTAAGGAGTACTGGTGCAAAAGATT GCACCCTAAGAATGTGTGTGAAAAAGTTTATAGACAACCTCCTCTGCGGGATTCTCTGAAAAAGGGTAAACTTAGAAAGCAAGATTTTGCCACAACAAAG CAGAAGATTGCTCTATTGGCAGCTGCAGATTCGATTGGCCAGAAGATTCAATATGATTGTTACGGCTTCTTATCCAATAGACGACAGCATCGTATGGCAG GATTAGCCATTATTGAAATTGCACAAAAGGTTGCAAAAGCATGGCGTTCTTTACAAAATGAATGGAAGCATTCTAATAAAAGCACATCAAAATACGGTAA ACGTGTCCGGAGAAGAATCAACATACCCAGCCAGAATAGAGGTGGGGCAGGTTGTAGTACCAGTAGTTCCTCTGAAACGACAACCTCATATGGCGTTCTT GAAGATAGATCATCTGGCCGTTCTACGATGTCATGGAAAGATGTTTACTCGATGGCTGTCAAATGGAGGCAGATATCTGAACCTTGTGACCCAGTTGTTT GGGTTAACAAGCTAAGTGAGGAATTCAATTCTGGATTTGGGTCTCACACACCAATGATTCTTGGACAAGCGAAAGTTATTCGCTACTATCAAAATTATGA AAGAACATTTGATGTTGCAAAAACAATCATGAAGGATAAACTCTTTGTGCACAACAAGTCAGACAACATCATTGGTTTGCCCGAAGATAAAATTCAAGCT ATTATAGATGCAAAAAACTGTACTGATCTATACAACGTAGTTGGTGAGGACTTCTGGTTGGCTACATTGTGCAGCAGCACAGCATTTGAAGAGAAGCAAC TTGAGGGCACGAGGATTACTCTAGTGAAGATGGGTGAAGGTGGATTTGACTTTGCAATCAGAACACCTTGTACACCATCTAGATGGGATGACTTTGATGC AGAAATGACAATGGCATGGGAAGCTGTGTGCAATGCTTATTGCGGTGATACTTATGGGTCAACTGATTTTGATGTCCTTGAAAATGTTAGAGATGCAATT CTAAGGATGACGTATTACTGGTACAATTTTATGCCATTGTCTAGAGGCTCTGCTGTTGTTGGGTTTACCGTTCTGCTTGGATTACTTCTTGCTGCAAATA TGGAGTTTACAGGGAAAATCCCAAAGGGTATACAGGTGGACTGGGAAGCCATTCTGAATTTTGATCCTAACTCCTTTGCAGAATCCGTTAAGAGGTGGTT GTATCCTTCTCTAAAGATTACGACATCTTGGAAAGATTATCCAGATGTCACATCGACTTTGGCAACAACAGGATCTGTAGTTGCTGCTCTGAGCTCCTAT GATGATCGAGCTCCTATGAATCCAGAGCAGTGA
AA sequence Show only first row Show all	>Potri.007G052200.4 pacid=42765827 polypeptide=Potri.007G052200.4.p locus=Potri.007G052200 ID=Potri.007G052200.4.v4.1 annot-version=v4.1 MASAISERVELAKLCSSRDWSKAIRVLDSLLVQSCAIQDICNRAFCYSQLELHKHVIKDCDRALQLDPTLLQAYILKGRAFSSLGRKDDALLVWEQGYEH ALHQSADLKQLLELEELLKFAKQDRSAGCETHVVESRLSMYASESQPHSKSDETSKHQNKLSDISNLCSGSRNVLGIHSKSGDNFEIHKGISDEVGRSLK LVPESGCHTNEKSSETSKNPSKASDKSELCSELRDAPEICCKSGDNFDMDNGLSDKAEGNQKPGILVNDNHDILDLPNHVSESCSGVSNASELSSRLSMI PGNLGDTSEILSKSSNKVNMHNEVTDETKGNKKLCVTRISKTKSISVDFRLSRGIAQVNEGKYATAISIFDQILKEDPTYPEALIGRGTARAFKRELGSA IADFSKAIESNPSAGEAWKRRGQARAALGESAEAINDLTKALEFEPNSADILHERGIVSYKFKDFDAAVEDLSACVKLDMDNMSAYTYLGLALSSIGEYK KAEEAHLKAIQLDRSFLEAWAHLTQFYQDMANSTKALDCINQVLQIDSRFAKAYHLRGLLLYGMGEHRKAIKDLSIGLSIENANIESLYLRASCYHAIGE YGEAVKDYDATLDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRKQDFATTK QKIALLAAADSIGQKIQYDCYGFLSNRRQHRMAGLAIIEIAQKVAKAWRSLQNEWKHSNKSTSKYGKRVRRRINIPSQNRGGAGCSTSSSSETTTSYGVL EDRSSGRSTMSWKDVYSMAVKWRQISEPCDPVVWVNKLSEEFNSGFGSHTPMILGQAKVIRYYQNYERTFDVAKTIMKDKLFVHNKSDNIIGLPEDKIQA IIDAKNCTDLYNVVGEDFWLATLCSSTAFEEKQLEGTRITLVKMGEGGFDFAIRTPCTPSRWDDFDAEMTMAWEAVCNAYCGDTYGSTDFDVLENVRDAI LRMTYYWYNFMPLSRGSAVVGFTVLLGLLLAANMEFTGKIPKGIQVDWEAILNFDPNSFAESVKRWLYPSLKITTSWKDYPDVTSTLATTGSVVAALSSY DDRAPMNPEQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Potri.007G052200 [exp]	0	1
AT3G14270		FAB1B	FORMS APLOID AND BINUCLEATE CE...		Potri.001G163200 [exp]	4.24	0.7779
AT5G15680			ARM repeat superfamily protein...		Potri.017G106100 [exp]	9.64	0.7682
AT3G19190		ATATG2	autophagy 2 (.1)		Potri.009G102900 [exp]	10.72	0.7801
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Potri.003G096700 [exp]	14.49	0.7106	Pt-CEO1.1
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.004G210200 [exp]	15.55	0.7162
AT5G19400		SMG7	Telomerase activating protein ...		Potri.001G275400 [exp]	15.81	0.7398
AT2G48060			unknown protein		Potri.014G137200 [exp]	19.26	0.7256
AT1G09730			Cysteine proteinases superfami...		Potri.002G105700 [exp]	30.49	0.7292
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Potri.010G224700 [exp]	30.85	0.6844
AT3G17450			hAT dimerisation domain-contai...		Potri.014G114100 [exp]	32.00	0.7410

Compare expression of checked genes

Potri.007G052200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.