Plant FIBer expression Database

Potri.007G052300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G43120 580 / 0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1)
AT3G50030 543 / 0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1)
AT5G10200 524 / 8e-180 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1)
AT4G12400 45 / 0.0001 Hop3 Hop3, stress-inducible protein, putative (.1.2)
AT1G62390 43 / 0.0007 CLMP1, Phox2 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G120800
[exp]
698 / 0 AT5G43120 635 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1)
Potri.007G092100
[exp]
535 / 0 AT5G10200 1085 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1)
Potri.005G076300
[exp]
530 / 0 AT5G10200 1113 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1)
Potri.011G021000
[exp]
49 / 1e-05 AT1G62390 885 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1)
Potri.004G002900
[exp]
45 / 0.0001 AT1G62390 926 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1)
Potri.017G149800
[exp]
44 / 0.0003 AT4G11260 419 / 1e-146 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018706
[exp]
539 / 0 AT5G43120 534 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1)
Lus10006301
[exp]
533 / 0 AT5G10200 1059 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1)
Lus10029573
[exp]
532 / 0 AT5G10200 1056 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1)
Lus10024789
[exp]
527 / 0 AT5G43120 533 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF13414 TPR_11 TPR repeat
Representative CDS sequence
>Potri.007G052300.1 pacid=42765742 polypeptide=Potri.007G052300.1.p locus=Potri.007G052300 ID=Potri.007G052300.1.v4.1 annot-version=v4.1
ATGGAGTCACAATCTCAAAAGAAGTCACTTGACAGGATCAGTTCGGTCCAGGAACCAGCATGCACCAATCCTTCATGTTTCTTTTGCACCATGAATGAAC
AAGACCCGTCTCTCAGAAAAGCCAAACTAGCTCGATGCTTCAAAGAAATGCCCCTGAGAGATGATCAAGAACATGTCTTGGTCCTACGTGGGATCTGGAA
CATTGCCATGACTCAACCTGATGATCCTGAGTTCCCATCCCTTGGCGTCTTTGACTGCATGGGAAAACTGATCCAGAGAGCCGTTAACGATAAGGAATGG
CTTCTTAGAGATCAAAACATCTACATCCCATACTATGCAGCGCATATTATTGGTTCATACACCATGAACAAAGTTCAATTTGCCGAGAAAGCAGTTAAAT
CGAATGTGGTTCTGCCTCTAATAGAACTTCTGAGAGGCAAAATCAGTTGGGTTGAGCAAAGAGTTGCGGTTCGATCACTAGGCCACTTGGCTAGCCATGC
GAGAACCTTTGAAGCCATTGCCGAGCATGAAGTTGAAATCATAAAGTTGGCCATGGAAATAGCTTGCAATTGCATTAAAACCGTCTACAGAAGGTTTATT
GGTGTAAAAGATAGCAAGAGAGTGAAGTACCATTCGGACCTGCTTACAACTGGGCTTGGAGACTTGGAGATAGAGAACAGAAAGGCTGAGGAATGGGCTA
GTCAGTTACAGTGCTGGTCCTTGCATCTCTTAAACTGCTTTGCTTGCAAAGGAAGATCACTAAATCTTATCTGCAACAAACACTTCCTGAAGGAGTTGGG
CGGCATGTGGGGTGGCTTGGCAAATTGCGCATCGCCTGGTGGAATAGGATGCATCAGAACTCTGTGCAACTTCAAGACTGGAAGAGAGAGTTTAGCGAAT
TCCAAAGAAGTGATAGAGATTTTATGCAATATCTCAAGATCTTCTGATGATTGGCAGTGTATGGCTATTGATTGTCTTCTCTTACTTCTAAAAGACACAG
ATACAAGATATATAGTCATAAACACCGCAGCTTTATCTCTGGCTGATTTGGTAGAGCTAAGAAGCCTTAATGAAAGAAAAAAAGTCGGAGAAGCAATAAC
ACAGGCACTCTTACAGGATTACCATAAGATCAAATATGGTGACTTAAAGTTGAGTAGCCAAGATGCTGAGAGAGCATTAAAGGAGACATGGGATTTGATG
GTAGAGAGAAGAAAGAGAGAGGAGCTAATGTCTGAAGAAGAGCTGAAAGAGAGAAAAAACTTGGTAGGCATGCTGAAACAAGAAGGAAACAAAAAGTTTT
GGTCTGGCCACATTGAAAAAGCTGTTACCAGATACACAAAAGCCCTGGATTTGTGCCCATCAAAGATGAGAAAGGAGAGAATAGTTCTGTATAGTAATAG
AGCTCAGGGTTATTTGCTGCTTAACAACCCTGAAGCTGTAATCAGTGACACAACTAGAGCCTTGTGCCTATCCACTACTGCGAATCCTCACAGGAAGAGC
CTTTGGAGAAGGGCACAGGCTTATGATATGAAAGGGTTAGCTAAGGAGAGTTTGATGGACTGCTTGATGTTCATCCATGGACGCATGAAAGCTGAGAAAA
CCAAGAATGCCAAGATCCCATACTTCGCAACACGTATGATTCACAAGCAAATGAATGCAACATGGCTTTTCGCAACTGTTGCCAAGTCAAAAGACAAATA
TGAAGCTGAAGTAGAAAAACCAAAAGTACTAGAGCATGGAGAGGACCAATGCCAAGTGACAGAGATCAAAGAGAGAAATGATTCAGTTCCAGATGGATCG
TTTATGGAAGGGGAACGGAGAAGTAGAAGCAAGCAAGGTAGGCCAAGGCAGAGAAAAGACGCTGCTGGCCATTGCTGCAGAATTGGCAGCTCAAGATGCA
GTGAGATGTGTTGA
AA sequence
>Potri.007G052300.1 pacid=42765742 polypeptide=Potri.007G052300.1.p locus=Potri.007G052300 ID=Potri.007G052300.1.v4.1 annot-version=v4.1
MESQSQKKSLDRISSVQEPACTNPSCFFCTMNEQDPSLRKAKLARCFKEMPLRDDQEHVLVLRGIWNIAMTQPDDPEFPSLGVFDCMGKLIQRAVNDKEW
LLRDQNIYIPYYAAHIIGSYTMNKVQFAEKAVKSNVVLPLIELLRGKISWVEQRVAVRSLGHLASHARTFEAIAEHEVEIIKLAMEIACNCIKTVYRRFI
GVKDSKRVKYHSDLLTTGLGDLEIENRKAEEWASQLQCWSLHLLNCFACKGRSLNLICNKHFLKELGGMWGGLANCASPGGIGCIRTLCNFKTGRESLAN
SKEVIEILCNISRSSDDWQCMAIDCLLLLLKDTDTRYIVINTAALSLADLVELRSLNERKKVGEAITQALLQDYHKIKYGDLKLSSQDAERALKETWDLM
VERRKREELMSEEELKERKNLVGMLKQEGNKKFWSGHIEKAVTRYTKALDLCPSKMRKERIVLYSNRAQGYLLLNNPEAVISDTTRALCLSTTANPHRKS
LWRRAQAYDMKGLAKESLMDCLMFIHGRMKAEKTKNAKIPYFATRMIHKQMNATWLFATVAKSKDKYEAEVEKPKVLEHGEDQCQVTEIKERNDSVPDGS
FMEGERRSRSKQGRPRQRKDAAGHCCRIGSSRCSEMC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G43120 ARM-repeat/Tetratricopeptide r... Potri.007G052300
[exp]
0 1
AT5G57620 MYB ATMYB36 myb domain protein 36 (.1) Potri.006G123400
[exp]
3.87 0.9608
AT4G37320 CYP81D5 "cytochrome P450, family 81, s... Potri.014G020700
[exp]
4.00 0.9523
AT1G58100 TCP TCP8 TCP domain protein 8, TCP fami... Potri.004G222100
[exp]
6.00 0.9328
AT2G03830 RGF8 root meristem growth factor 8,... Potri.010G138001
[exp]
10.39 0.9424
AT2G45430 AT-hook AHL22 AT-hook motif nuclear-localize... Potri.014G070800
[exp]
10.95 0.9462
AT3G12720 MYB ATMYB67, AtY53 myb domain protein 67 (.1) Potri.008G081600
[exp]
12.40 0.9381
AT5G36970 NHL25 NDR1/HIN1-like 25 (.1) Potri.015G148200
[exp]
12.64 0.9409
AT2G44290 Bifunctional inhibitor/lipid-t... Potri.006G195700
[exp]
17.54 0.9331
AT2G26710 CYP72B1, CYP734... PHYB ACTIVATION TAGGED SUPPRES... Potri.018G070900
[exp]
18.33 0.9400
AT2G24430 NAC ANAC039, ANAC03... Arabidopsis NAC domain contain... Potri.018G003800
[exp]
19.39 0.9380

Potri.007G052300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.