Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37480 564 / 0 Chaperone DnaJ-domain superfamily protein (.1) AT1G80030 65 / 5e-11 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G17830 64 / 1e-10 Molecular chaperone Hsp40/DnaJ family protein (.1) AT4G39960 63 / 3e-10 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G28210 62 / 4e-10 ATJ1 DNAJ heat shock family protein (.1.2) AT4G13830 58 / 5e-10 J20 DNAJ-like 20 (.1.2) AT2G22360 61 / 1e-09 DNAJ heat shock family protein (.1) AT5G03160 58 / 1e-08 ATP58IPK homolog of mamallian P58IPK (.1) AT3G13310 54 / 2e-08 Chaperone DnaJ-domain superfamily protein (.1) AT1G74250 57 / 3e-08 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G160200 [exp] 64 / 7e-11 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.005G073900 [exp] 63 / 2e-10 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 62 / 3e-10 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.009G131800 [exp] 58 / 3e-10 AT2G17880 109 / 9e-32 Chaperone DnaJ-domain superfamily protein (.1) Potri.016G120000 [exp] 62 / 6e-10 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G020700 [exp] 59 / 6e-10 AT2G17880 108 / 3e-30 Chaperone DnaJ-domain superfamily protein (.1) Potri.003G031800 [exp] 62 / 7e-10 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.004G172300 [exp] 58 / 7e-10 AT2G17880 115 / 2e-33 Chaperone DnaJ-domain superfamily protein (.1) Potri.015G035300 [exp] 61 / 1e-09 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019286 [exp] 583 / 0 AT4G37480 526 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Lus10011536 [exp] 511 / 9e-179 AT4G37480 484 / 5e-168 Chaperone DnaJ-domain superfamily protein (.1) Lus10017263 [exp] 60 / 3e-10 AT4G36040 106 / 2e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10002852 [exp] 62 / 5e-10 AT3G08970 600 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10023181 [exp] 62 / 6e-10 AT5G03160 507 / 2e-178 homolog of mamallian P58IPK (.1) Lus10032957 [exp] 58 / 6e-10 AT3G13310 109 / 2e-31 Chaperone DnaJ-domain superfamily protein (.1) Lus10019928 [exp] 62 / 7e-10 AT5G03160 637 / 0.0 homolog of mamallian P58IPK (.1) Lus10015078 [exp] 62 / 7e-10 AT5G03160 638 / 0.0 homolog of mamallian P58IPK (.1) Lus10031336 [exp] 62 / 7e-10 AT3G17830 459 / 5e-158 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10026498 [exp] 62 / 8e-10 AT5G03160 576 / 0.0 homolog of mamallian P58IPK (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.007G052400.18 pacid=42766075 polypeptide=Potri.007G052400.18.p locus=Potri.007G052400 ID=Potri.007G052400.18.v4.1 annot-version=v4.1 ATGAAGTACAGTTATATAGTCTTATCCTTGAATCCGAGTTATGGAGGTCGGTGGTTGAGCAGCAGCAGCTCCGAGTCGACTCGGCCTGAGTTCACTGGCG AGAACGCGTATGATATCTTAGGAGTTTCGGAGAGCAGCTCATTGGCTGAAATCAAAGCTTCGTTTCATAAATTAGCGAAACAAACTCACCCTGACCTCGC TCATCACTCAAACGCCTTTAATTCTCACCGTTTCATTCAAATCCTCGCTGCTTATGAGATTCTTTCGGACGCTGAGAAGAGGGCGCACTATGACAGTTAT TTGCTATCTCAGAGAAAGAAAGTGATAGTGCCGAGACAAGGTTCGACATTGTACAGATACGAATCGCGAATGACTATGAATAAAGAGATGGAAGTTGTTG AGTGGTTAAAGTGGTATAGATTGGCTATAAATGATATATTGTCTCAGAGAGAGGTGGTGGCTGGAACTGGTTATTTTGATGTACTTGAAGCTGATTTTTA TTCAGCCATACATGCAGCTTATTATGGACCTGTAATTGAGTCCATGGATCTTCTTCCTGATCGGTTTGAGGCGGAGGAAAGGTCTGTCTGTGAAACTCCT GAGGTTCTGCATTTGGTTTCGGGTCGTCATCTTTTTGGAATGGTCTGCCTGGCCGACAAGATTCCTAAATTATCTTCTGCCTCTACTAAAAAATTAAAAA ATGCCTTCGCATCTTTTGATTTGGGAGTCTGTAAATCTGTTGAGGATACATGTGTCTTGAAAAATTCCAATGCGGTGGATGATGCTGGAATTTCTCAGAT GCATCCAGGGAATAGTGTAAGTGATAAATCAGATGCATATGAAGATTTAGAATTGTATGTTTCTGGAAGGGTGGTCGCTGTGGCAACTAGAGTTCCTCCT AAAAACCAGGATGACAGAGCAGTACAGAATGAAGATGCACAAGATCAGATACATGTTTTTCTTAACTCGGATGATGATCTTGTGCATGCTAGCAAAGGTT CTTACAAGGAATCTCTTTTGACTGGTGCTGTTGGTGCAAGGATTCCACTAGGAACTATAAAGGGAATGGGCAGCAGTCCTGAAGAGGGATCATGCTTTGT CTATGATGGCTGTGGTACCAAAACTCATGTGATGATGAAACATAGAACTTTGATGGTGAAGCATATGCACTGGTATGGAGTAGGAGATAAAGTTTCTATT GTTGAATGCAGATGCAGCAGAGCCCGATTGCCACCAAGCAAATTTTGGCTGTTTGAGCCTCGTTGTGACATGCACGACATAGGTGGTTGGTATGTTGAAA CATTCGGTAGAGATAAGAAAGGTCGGACAGTTCCATCTCAAAGGTATTGGGATGGATTTGATGGAAATGAACAAAATGACAAAAGACTACATCCGGCGAT GTATTTACTTGCTCTTGCATATAGAACTCTGGATATTGAAGATTCAAAAAGAAGGAAATGGACAGTTAGGAATTTAGTTGAAAATCAATTGTTTAGAATA CTCCATTGGTGCAAGAAACTTGTGTAG
AA sequence Show only first row Show all	>Potri.007G052400.18 pacid=42766075 polypeptide=Potri.007G052400.18.p locus=Potri.007G052400 ID=Potri.007G052400.18.v4.1 annot-version=v4.1 MKYSYIVLSLNPSYGGRWLSSSSSESTRPEFTGENAYDILGVSESSSLAEIKASFHKLAKQTHPDLAHHSNAFNSHRFIQILAAYEILSDAEKRAHYDSY LLSQRKKVIVPRQGSTLYRYESRMTMNKEMEVVEWLKWYRLAINDILSQREVVAGTGYFDVLEADFYSAIHAAYYGPVIESMDLLPDRFEAEERSVCETP EVLHLVSGRHLFGMVCLADKIPKLSSASTKKLKNAFASFDLGVCKSVEDTCVLKNSNAVDDAGISQMHPGNSVSDKSDAYEDLELYVSGRVVAVATRVPP KNQDDRAVQNEDAQDQIHVFLNSDDDLVHASKGSYKESLLTGAVGARIPLGTIKGMGSSPEEGSCFVYDGCGTKTHVMMKHRTLMVKHMHWYGVGDKVSI VECRCSRARLPPSKFWLFEPRCDMHDIGGWYVETFGRDKKGRTVPSQRYWDGFDGNEQNDKRLHPAMYLLALAYRTLDIEDSKRRKWTVRNLVENQLFRI LHWCKKLV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37480			Chaperone DnaJ-domain superfam...		Potri.007G052400 [exp]	0	1
AT1G21410		SKP2A	F-box/RNI-like superfamily pro...		Potri.002G074700 [exp]	2.44	0.7370
AT1G58200		MSL3	MSCS-like 3 (.1.2)		Potri.005G154000 [exp]	12.04	0.7453
AT2G31130			unknown protein		Potri.019G089900 [exp]	16.15	0.7032
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Potri.009G041700 [exp]	18.76	0.6419
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G062800 [exp]	40.00	0.6788
AT1G27170			transmembrane receptors;ATP bi...		Potri.015G043600 [exp]	45.51	0.6808
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036600 [exp]	46.43	0.6460
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Potri.018G129700 [exp]	46.47	0.6627
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Potri.019G054000 [exp]	124.09	0.6045
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.014G019400 [exp]	130.03	0.5879

Compare expression of checked genes

Potri.007G052400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.