Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67370 392 / 3e-137 Protein of unknown function (DUF1230) (.1) AT5G11840 139 / 2e-39 Protein of unknown function (DUF1230) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G229600 [exp] 150 / 1e-43 AT5G11840 303 / 4e-104 Protein of unknown function (DUF1230) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011087 [exp] 370 / 3e-129 AT5G67370 388 / 6e-136 Protein of unknown function (DUF1230) (.1) Lus10039247 [exp] 143 / 1e-40 AT5G11840 287 / 1e-97 Protein of unknown function (DUF1230) (.1) Lus10027492 [exp] 109 / 2e-29 AT5G11840 155 / 3e-48 Protein of unknown function (DUF1230) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06799 [poplar] [flax] DUF1230 Conserved in the green lineage and diatoms 27
Representative CDS sequence Show only first row Show all	>Potri.007G052500.1 pacid=42765830 polypeptide=Potri.007G052500.1.p locus=Potri.007G052500 ID=Potri.007G052500.1.v4.1 annot-version=v4.1 ATGCTCAAGCTGAATGTCTGCTGCTCTCTAATTCCTAGTCCAAGACAAGCCACACTTGGAGCCAGCCATAGATCATGGATCATTAGATACCATAGAGCTC AGAAACTATTACCGGTGGTTTCTGTGAAAGCTTTGAAAGATGACACTAATGAGGGTACAAGCAGTTTCCGAGGCCGGAGCTGGGAGCCTGGCTTGGAAAT TGAGGTCCCTTTTGAACAAAGGCCGGTGAACGAGTACTCGTCTTTGAAAGAGGGACCCCTGTATTCTTGGGGTGAACTTGGTCCAGGACCCTTTTTACTT CGCCTTGGTGGACTCTGGTTAGTAACCTTCACTGTTCTTGGAGTTCCGATTGCAGCTGCAACTTTCAATCCTTCCAGGGAACCATTAAGATTTGTGCTAG CTGCTGGAACAGGAACTCTATTCCTTGTGTCATTAATCATCTTAAGAATATATCTGGGATGGAGTTATGTTGGTGATAGACTTCTGTCAGCAGTGATCCC CTATGAAGAGAGTGGATGGTATGATGGACAAATGTGGGTAAAGCCAACTGAGGTCCTGGCTCGTGATAGACTGTTGGGCTCTTACAAGGTTAAACCAGTC ATCAAGATGTTGAAACAAACACTTGTCGGAACAGGAGCGTTGCTCGTGACAGCAGTAATGCTATTTATCTTTGCTACACCAGTAGAAGATTTCTTTCAAA CGACTTTTGCCACAAAAGAAAACCCATCAATTGATCCAGCTTCAGGGAAAAATACAAAGTACAACGTGAGAAAAGAGGAGTTGCTTAGATTGCCTGTGGA GGTGATAGCTGATGATGATTTGGCAGCTGCCGCCGCTGAGGCTGCTGGTGGAAGACCAGTCTATTGCAGAGACAGATATTATCGTGCATTAGCAGGTGGA CAGTACTGCAAATGGGAAGACCTACTTAACCGATGA
AA sequence Show only first row Show all	>Potri.007G052500.1 pacid=42765830 polypeptide=Potri.007G052500.1.p locus=Potri.007G052500 ID=Potri.007G052500.1.v4.1 annot-version=v4.1 MLKLNVCCSLIPSPRQATLGASHRSWIIRYHRAQKLLPVVSVKALKDDTNEGTSSFRGRSWEPGLEIEVPFEQRPVNEYSSLKEGPLYSWGELGPGPFLL RLGGLWLVTFTVLGVPIAAATFNPSREPLRFVLAAGTGTLFLVSLIILRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPTEVLARDRLLGSYKVKPV IKMLKQTLVGTGALLVTAVMLFIFATPVEDFFQTTFATKENPSIDPASGKNTKYNVRKEELLRLPVEVIADDDLAAAAAEAAGGRPVYCRDRYYRALAGG QYCKWEDLLNR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67370			Protein of unknown function (D...		Potri.007G052500 [exp]	0	1
AT2G29090		CYP707A2	"cytochrome P450, family 707, ...		Potri.009G033900 [exp]	1.73	0.9276
AT5G58660			2-oxoglutarate (2OG) and Fe(II...		Potri.001G278200 [exp]	2.44	0.9315
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Potri.011G131300 [exp]	3.31	0.9101
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Potri.017G032766 [exp]	4.79	0.9339
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Potri.009G095100 [exp]	6.00	0.9129
AT2G19130			S-locus lectin protein kinase ...		Potri.013G149500 [exp]	6.00	0.9225
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Potri.008G024100 [exp]	9.38	0.8809
AT1G47510		AT5PTASE11, 5PT...	ARABIDOPSIS THALIANA INOSITOL ...		Potri.014G039800 [exp]	10.48	0.9113
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Potri.014G159000 [exp]	10.58	0.9212	Pt-ACO1.4
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Potri.010G045900 [exp]	11.66	0.9166	ATTAP1.1

Compare expression of checked genes

Potri.007G052500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.