Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23093 424 / 3e-146 Major facilitator superfamily protein (.1) AT4G27720 92 / 5e-20 Major facilitator superfamily protein (.1) AT3G49310 87 / 2e-18 Major facilitator superfamily protein (.1) AT1G64650 84 / 3e-17 Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G020500 [exp] 87 / 3e-18 AT4G27720 761 / 0.0 Major facilitator superfamily protein (.1) Potri.015G008100 [exp] 87 / 4e-18 AT4G27720 827 / 0.0 Major facilitator superfamily protein (.1) Potri.003G145600 [exp] 86 / 5e-18 AT1G64650 831 / 0.0 Major facilitator superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014854 [exp] 528 / 0 AT2G23093 499 / 2e-175 Major facilitator superfamily protein (.1) Lus10011083 [exp] 527 / 0 AT2G23093 502 / 1e-176 Major facilitator superfamily protein (.1) Lus10003219 [exp] 85 / 2e-17 AT1G64650 821 / 0.0 Major facilitator superfamily protein (.1.2) Lus10017322 [exp] 84 / 4e-17 AT1G64650 799 / 0.0 Major facilitator superfamily protein (.1.2) Lus10033228 [exp] 81 / 3e-16 AT1G64650 835 / 0.0 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF05631 [poplar] [flax] MFS_5 Sugar-tranasporters, 12 TM
Representative CDS sequence Show only first row Show all	>Potri.007G052700.3 pacid=42766389 polypeptide=Potri.007G052700.3.p locus=Potri.007G052700 ID=Potri.007G052700.3.v4.1 annot-version=v4.1 ATGGGAGTAGAAGTAGAGAATTCAAAATGGGAACCAAATCCATCACTCTACGGATTCATAATAATGTGTTGCTTCTTTTCAATCGCTCTCTTTCCTCGTT TTTTCAACAAATCTGTCTCTCCCTCTGCCTTCTCTGATCAGTCCCTCTCTCCCTCTTCCCACCGATACTTCCTCTTCCTTTACTGTCTCGCTTCAGCGAT GGAAGGAGTTTGGTCGGTTTTCGGAGATTTTGAGTTTGTTTATAATGGCATGAGTAAGGAGCAGATACTCTTCTCCCTTTGTCTTGGATTTGGATCTTCT CTTCTTTTCGCTTCTCTTCTACCTTTCCTCTCTGATTCAATAGGCGGACACCACAAGGCATGCTTGATGTTTTGCATACTACACCTCTTTGTCGGTACAT GGAAGAGGATGGTGCCACAATCACACCCTTGTATTTGGTTACCCACTCTCTCTTCATCGCTTGCCACTTCCATTTTTTCTTTTGCTTTCGAGGCGTGGCT CGTTCTTGAAAATGAAAACCAAGGGTATAGGCAACGTGCTCTCACTCACACTTTTTGGTTAATGACTTTCTTTGAGTCTGCATCATTGATTGGAAGCCAG GTGCTTGCAAATTGGCTACTTGCTAGTAATGTGGATACAGGAATTGCATCTTCTTCCACTGCAACTATCTTCATTGCAATCATTGGCATTTTCTGTGTCA CCAAAGGATGGAAGCAAGCCCCATATTCTGCACCAGTAAAGGATCGCCGTCAGATGTCTTACACGCATATCTTTAGTGATAAACGGATATTGTTACTGGG TTTTGCACATGCTTGCCTTCAGTTCTCGATTGCAATCTTCTGGATCCTGTGGGCCCCAACATTGGTGGCTGATGGACGAGAAGTGCATCTAGGATTGATA TATCCATGCCTAATGGGTGCAAGAATGCTGGGAAGCACTGTGTTTCCATGGTTATTGAGTGGTCCATCATCACTTCGGATTGAGGATTGCCTAGTATATG CATTCACTGTACTGGGGCTTGCCTTGTCTATTGTAGCTTATGATTATCAGGAAATTGGAGTTTTAGTGTCATTGTTTTGCCTATTCCATGCGGGTGTGGG CCTGATTATACCTTCACTTGCAAGATTGAGGACCATTCATGTACCAAATGAATTGCGTGGAGGGATGATAAGCCTTTCTCTAGCACCTGCAAATGCAGCT ATTCTGTTTTTGCTGATACTAAGAGGCTATTACCAGAAAATAGAGAATTCAACAATTGTGGCACTTGCTGCTCTTGGGCTTTTCATGGCATCTGGTTCCA TGCATTTGTTGAAGCGTTGGGGAAAGCAGCCGTTTCAAAACTGGCACAAGTCATAA
AA sequence Show only first row Show all	>Potri.007G052700.3 pacid=42766389 polypeptide=Potri.007G052700.3.p locus=Potri.007G052700 ID=Potri.007G052700.3.v4.1 annot-version=v4.1 MGVEVENSKWEPNPSLYGFIIMCCFFSIALFPRFFNKSVSPSAFSDQSLSPSSHRYFLFLYCLASAMEGVWSVFGDFEFVYNGMSKEQILFSLCLGFGSS LLFASLLPFLSDSIGGHHKACLMFCILHLFVGTWKRMVPQSHPCIWLPTLSSSLATSIFSFAFEAWLVLENENQGYRQRALTHTFWLMTFFESASLIGSQ VLANWLLASNVDTGIASSSTATIFIAIIGIFCVTKGWKQAPYSAPVKDRRQMSYTHIFSDKRILLLGFAHACLQFSIAIFWILWAPTLVADGREVHLGLI YPCLMGARMLGSTVFPWLLSGPSSLRIEDCLVYAFTVLGLALSIVAYDYQEIGVLVSLFCLFHAGVGLIIPSLARLRTIHVPNELRGGMISLSLAPANAA ILFLLILRGYYQKIENSTIVALAALGLFMASGSMHLLKRWGKQPFQNWHKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23093			Major facilitator superfamily ...		Potri.007G052700 [exp]	0	1
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Potri.002G139200 [exp]	3.74	0.8289
					Potri.010G031250 [exp]	4.89	0.8240
AT3G09320			DHHC-type zinc finger family p...		Potri.016G100200 [exp]	7.41	0.7955
AT4G16460			unknown protein		Potri.006G016100 [exp]	8.83	0.7367
AT1G45150			unknown protein		Potri.014G180700 [exp]	11.61	0.8127
AT1G01020		ARV1	Arv1-like protein (.1.2)		Potri.014G107300 [exp]	11.95	0.7637
AT1G04420			NAD(P)-linked oxidoreductase s...		Potri.015G042100 [exp]	12.24	0.7625
AT3G20475		ATMSH5	MUTS-homologue 5 (.1)		Potri.011G089500 [exp]	15.49	0.7640
AT2G35760			Uncharacterised protein family...		Potri.006G016900 [exp]	15.81	0.7374
AT1G06590			unknown protein		Potri.004G081200 [exp]	19.39	0.6797

Compare expression of checked genes

Potri.007G052700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.