Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67380 632 / 0 ATCKA1, CKA1 casein kinase alpha 1 (.1.2) AT3G50000 625 / 0 ATCKA2, CKA2 "casein kinase II, alpha chain 2", casein kinase II, alpha chain 2 (.1) AT2G23080 606 / 0 CKA3 casein kinase II, alpha chain 3, Protein kinase superfamily protein (.1.2) AT2G23070 580 / 0 Protein kinase superfamily protein (.1) AT3G48750 139 / 5e-38 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G20930 139 / 7e-38 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT1G76540 138 / 9e-38 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT3G61160 139 / 4e-37 Protein kinase superfamily protein (.1.2) AT2G30980 137 / 1e-36 ASKdZeta, ATSK23, BIL1, ATSK2-2 BIN2-LIKE 1, SHAGGY-LIKE PROTEIN KINASE 23, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 2, SHAGGY-related protein kinase dZeta (.1) AT1G06390 136 / 4e-36 ATGSK1, GSK1, ATSK22, BIL2, ATSK2-3 BIN2-LIKE 2, SHAGGY-LIKE PROTEIN KINASE 22, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 3, GSK3/SHAGGY-like protein kinase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G145900 [exp] 646 / 0 AT5G67380 620 / 0.0 casein kinase alpha 1 (.1.2) Potri.007G054100 [exp] 586 / 0 AT2G23070 638 / 0.0 Protein kinase superfamily protein (.1) Potri.005G146000 [exp] 576 / 0 AT2G23070 625 / 0.0 Protein kinase superfamily protein (.1) Potri.002G003400 [exp] 144 / 7e-40 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.005G257500 [exp] 137 / 2e-37 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.002G155000 [exp] 140 / 3e-37 AT4G00720 772 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Potri.004G133500 [exp] 133 / 5e-36 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.016G142800 [exp] 131 / 3e-35 AT2G38620 536 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.006G113200 [exp] 132 / 4e-35 AT2G38620 545 / 0.0 cyclin-dependent kinase B1;2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011534 [exp] 635 / 0 AT3G50000 620 / 0.0 "casein kinase II, alpha chain 2", casein kinase II, alpha chain 2 (.1) Lus10019288 [exp] 634 / 0 AT5G67380 623 / 0.0 casein kinase alpha 1 (.1.2) Lus10011526 [exp] 579 / 0 AT2G23070 632 / 0.0 Protein kinase superfamily protein (.1) Lus10019296 [exp] 577 / 0 AT2G23070 631 / 0.0 Protein kinase superfamily protein (.1) Lus10032849 [exp] 560 / 0 AT5G67380 563 / 0.0 casein kinase alpha 1 (.1.2) Lus10040593 [exp] 141 / 9e-39 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10021611 [exp] 139 / 4e-38 AT1G76540 531 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10013088 [exp] 139 / 4e-37 AT5G14640 741 / 0.0 shaggy-like kinase 13 (.1) Lus10018850 [exp] 136 / 1e-35 AT4G00720 747 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10001519 [exp] 134 / 2e-35 AT5G26751 790 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.007G052800.1 pacid=42766695 polypeptide=Potri.007G052800.1.p locus=Potri.007G052800 ID=Potri.007G052800.1.v4.1 annot-version=v4.1 ATGAAAAAAGATGGGCGAAACCCAGCAGTAGCGCCTCTGTTTCCTCGCTTTCTGCTACTGTGCGCCCTTATTGCTTTGCGTGCGACTGTGGCGCACGACT CTATCCAGCGCACCACCATCCTCTCCAACAACGAAGAAACCGATACCGTTAATATCATCGAGATCTCGAATCGACGGGGATCGATGTCGAAAGCGCGAGT TTATACCGATGTTAATGTTCTGCGTCCTAAGGAATATTGGGATTACGAGTCTCTCACCGTTCAATGGGGAGATCAAGATGATTACGAGGTTGTTCGGAAG GTTGGAAGGGGAAAGTATAGTGAAGTTTTTGAAGGCATAAATGTCAATAGCAATGAGCGGTGCGTTATCAAGATACTCAAACCTGTTAAGAAAAAGAAGA TTAAGAGGGAAATAAAAATACTTCAGAACCTCTGTGGTGGCCCAAATGTAGTGAAGCTTCTAGACATTGTTAGAGATCAGCACTCAAAAACTCCTAGCCT CATATTTGAATATGTGAACAGTACAGACTTCAAAGTTTTGTACCCCACTTTGACTGATTATGACATACGCTACTATATATACGAGCTTCTCAAGGCTCTA GATTACTGTCACTCGCAAGGAATAATGCATAGAGATGTCAAGCCTCACAATGTTATGATAGACCATGAGTTGCGAAAACTCCGCTTGATAGACTGGGGTC TTGCTGAATTTTACCATCCTGGCAAGGAGTATAATGTTCGGGTGGCCTCGAGATATTTCAAGGGGCCTGAACTTCTTGTTGATTTACAAGACTATGATTA TTCTTTAGATATGTGGAGCCTTGGTTGCATGTTTGCTGGAATGATATTTAGGAAGGAGCCATTCTTTTATGGCCATGACAACCATGATCAGCTTGTCAAA ATTGCGAAGGTACTTGGAACTGATGAGCTAAATGCATATCTGAATAAATATCATTTAGAGCTTGATCCTCAACTTGATGCGCTTGTTGGGAGGCACAGTA GGAAGCCATGGTCAAAGTTTATTAATTCAGATAATCAGCACCTTGTGTCTCCTGAGGCCCTTGATTTTCTTGATAAGCTTCTTCGGTATGATCATCAAGA CAGGCTAACTGCTAGAGAAGCAATGGCCCACCCATATTTTTCCCAAGTGAGGGCTGCAGAAAGTAGCAGGATGCGGACACAGTAG
AA sequence Show only first row Show all	>Potri.007G052800.1 pacid=42766695 polypeptide=Potri.007G052800.1.p locus=Potri.007G052800 ID=Potri.007G052800.1.v4.1 annot-version=v4.1 MKKDGRNPAVAPLFPRFLLLCALIALRATVAHDSIQRTTILSNNEETDTVNIIEISNRRGSMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRK VGRGKYSEVFEGINVNSNERCVIKILKPVKKKKIKREIKILQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKAL DYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVK IAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINSDNQHLVSPEALDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Potri.007G052800 [exp]	0	1
AT4G26980			RNI-like superfamily protein (...		Potri.011G090700 [exp]	2.00	0.8929
AT3G07870			F-box and associated interacti...		Potri.013G053301 [exp]	2.82	0.8539
AT3G30841			Cofactor-independent phosphogl...		Potri.017G109500 [exp]	4.12	0.8395
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Potri.012G080800 [exp]	4.89	0.8652
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Potri.010G067500 [exp]	5.00	0.8635
AT3G58180			ARM repeat superfamily protein...		Potri.002G041400 [exp]	5.91	0.8149
AT5G51940		NRPE6A, NRPD6A,...	RNA polymerase Rpb6 (.1)		Potri.012G136900 [exp]	6.00	0.8692
AT3G58030			RING/U-box superfamily protein...		Potri.016G058300 [exp]	6.32	0.8334
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Potri.001G132500 [exp]	8.83	0.8590
AT2G44410			RING/U-box superfamily protein...		Potri.001G229600 [exp]	11.74	0.8303

Compare expression of checked genes

Potri.007G052800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.