Plant FIBer expression Database

Potri.007G053000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G37510 831 / 0 Ribonuclease III family protein (.1)
AT2G48121 134 / 6e-38 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019289
[exp]
860 / 0 AT4G37510 847 / 0.0 Ribonuclease III family protein (.1)
Lus10011533
[exp]
859 / 0 AT4G37510 860 / 0.0 Ribonuclease III family protein (.1)
PFAM info
Representative CDS sequence
>Potri.007G053000.3 pacid=42765987 polypeptide=Potri.007G053000.3.p locus=Potri.007G053000 ID=Potri.007G053000.3.v4.1 annot-version=v4.1
ATGGAACTCTCCTCTTCTTTCTCTCAATTACCAAAAATATCTGACATCTCCTTCTCATCTTCTTGTGCTCCTTTCCCCCTTCAAATCAGATACCTTAAAC
CCCACCACAAAACCCTACAAAATCTTGGTGTTTTTGCAGTCGCTATAGACCCACAAGAACTCCCTAAAAACAGCCCTCAAAGACTTCTTAAAGAACTAGC
AGAACGCAAGAAAACCACATCCCCAAAGAGAAGAATACCCCCCAAAAGATTCATACTTAAACCCCCACTCGATGATAAAAGACTCGCACAGAGGTTTTTG
AATAGCCCTCAACTGTCCCTCAAACAATTTCCATTATTGAGTTCTTGTTTGCCTTCTTCAAGGCTGAACAATGCTGATCAAACTTGGATTGATGAGTATT
TGTTAGAAGCCAAACAAGCTTTGGGGTACCCTTTAGAGCCAAGTGATAGATTTGGGGATGATAATCCTGCTAAACAATTTGATACTTTGTTGTATTTGGC
ATTTCAGCATCCGAGTTGCGAACGGACTAATGCCAGGCATGTGAGATCAGGGCATTCAAGGTTGTGCTTCTTGGGGCAGTATGTTTTGGAATTGGCTTTC
GCTGAGTATTTCTTGCAGAGATATCCTAGGGAGTCTCCTGCTCCTTTGAGGGAAAGAGTTTTTGGGTTGATTGGGAAGAGGAATTTGCCCAAATGGATTA
AAGCTGCCAGTTTGCACAACTTGATTTTTCCTTATGATAATATGGATAAGTTGCAGAGGAAGGAGCGAGAACCGCCAGTTAAGTCTGTGTTCTGGGCTGT
GTTTGGGGCAATATACTTGTGTTTTGGCATGCCAGAAGTATATCGTGTTCTTTTTGAAGTATTTGAGATGGACCCAGAAGCAGAGGACTGCCAGCCAAAA
TTAAGGAGGCAATTTGAAGATGTAGATTATGTTTCTGTTGAATTTGAAGGCAAGCAGCTCAGTTGGCAAGATGTTGCTGCTTATAAGCCTCCTGAAGATG
CTCTCTTTGCACACCCTAGGCTTTTCAGGGCTTGTGTCCCACCAGGCATGCACCGATTCCGAGGAAATATATGGGATTATGAAAGCAGACCCCATGTTAT
GCGAACATTGGGCTATCCCCTAACAATGAGAGACAGAATTCCAGACATAACTAAAGCTAGGAATATCGAACTTGGACTTGGGTTACAGCTCTGTTTCCTG
CACCCATCAAACTACAAATTTGAGCACCCTCGATTTTGTTATGAGCGATTAGAATATGTTGGCCAAAAGATCCAGGATATTGTCATGGCCGAGAGATTAC
TGATGAAGCATCTGGATGCTCCTGGAAAGTGGCTACAGGAGAAGCACCGCCGTGTTCTCATGAACAAGTTCTGTGGAAGGTACTTGAGAGAGAAGCATCT
CCATAAATATATCACCTATGCTGACAAGGTTCAAGATGCATACGAGCACAATAGAAGACTAAGAAACCCTTCGACAACTGCTGTTAACCATTCCCTTCAC
GGGCTTTCATACACTATATATGGGAAACCAGACGTGAGGCGCCTCATGTTTGACGTTTTTGATTTTGAGCAAACTCAACCAAAACTTGTATGA
AA sequence
>Potri.007G053000.3 pacid=42765987 polypeptide=Potri.007G053000.3.p locus=Potri.007G053000 ID=Potri.007G053000.3.v4.1 annot-version=v4.1
MELSSSFSQLPKISDISFSSSCAPFPLQIRYLKPHHKTLQNLGVFAVAIDPQELPKNSPQRLLKELAERKKTTSPKRRIPPKRFILKPPLDDKRLAQRFL
NSPQLSLKQFPLLSSCLPSSRLNNADQTWIDEYLLEAKQALGYPLEPSDRFGDDNPAKQFDTLLYLAFQHPSCERTNARHVRSGHSRLCFLGQYVLELAF
AEYFLQRYPRESPAPLRERVFGLIGKRNLPKWIKAASLHNLIFPYDNMDKLQRKEREPPVKSVFWAVFGAIYLCFGMPEVYRVLFEVFEMDPEAEDCQPK
LRRQFEDVDYVSVEFEGKQLSWQDVAAYKPPEDALFAHPRLFRACVPPGMHRFRGNIWDYESRPHVMRTLGYPLTMRDRIPDITKARNIELGLGLQLCFL
HPSNYKFEHPRFCYERLEYVGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRVLMNKFCGRYLREKHLHKYITYADKVQDAYEHNRRLRNPSTTAVNHSLH
GLSYTIYGKPDVRRLMFDVFDFEQTQPKLV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G37510 Ribonuclease III family protei... Potri.007G053000
[exp]
0 1
AT3G58830 haloacid dehalogenase (HAD) su... Potri.002G060600
[exp]
2.44 0.9808
AT5G16620 PDE120, TIC40, ... pigment defective embryo 120, ... Potri.004G087100
[exp]
3.00 0.9739
AT1G80480 PTAC17 plastid transcriptionally acti... Potri.003G030100
[exp]
3.46 0.9791
AT5G18570 EMB3138, ATOBGL... EMBRYO DEFECTIVE 3138, EMBRYO ... Potri.002G029600
[exp]
4.00 0.9698
AT3G19490 ATNHD1 ARABIDOPSIS THALIANA NA/H ANTI... Potri.001G301000
[exp]
4.89 0.9780 NHD1.2
AT2G37920 EMB1513 embryo defective 1513, copper ... Potri.016G103600
[exp]
5.29 0.9743
AT5G52520 PRORS1, OVA6 PROLYL-TRNA SYNTHETASE 1, OVUL... Potri.017G142500
[exp]
5.91 0.9772
AT4G09040 RNA-binding (RRM/RBD/RNP motif... Potri.005G161000
[exp]
7.48 0.9742
AT4G24770 CP31, ATRBP33, ... ARABIDOPSIS THALIANA RNA BINDI... Potri.015G086500
[exp]
11.95 0.9707 CTRNP.1
AT3G54210 Ribosomal protein L17 family p... Potri.006G113500
[exp]
12.00 0.9746

Potri.007G053000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.