Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67385 808 / 0 Phototropic-responsive NPH3 family protein (.1) AT3G49970 576 / 0 Phototropic-responsive NPH3 family protein (.1) AT5G48800 469 / 6e-159 Phototropic-responsive NPH3 family protein (.1) AT2G30520 426 / 1e-142 RPT2 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) AT1G03010 413 / 4e-137 Phototropic-responsive NPH3 family protein (.1) AT3G08570 401 / 1e-132 Phototropic-responsive NPH3 family protein (.1) AT2G47860 399 / 2e-131 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3) AT3G08660 361 / 2e-117 Phototropic-responsive NPH3 family protein (.1) AT1G30440 355 / 3e-114 Phototropic-responsive NPH3 family protein (.1) AT5G03250 331 / 1e-105 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G242300 [exp] 498 / 2e-170 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G139900 [exp] 459 / 2e-155 AT3G08570 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G209700 [exp] 460 / 3e-155 AT1G03010 847 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.014G133500 [exp] 450 / 3e-151 AT1G03010 843 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.013G159000 [exp] 431 / 8e-145 AT2G30520 846 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Potri.019G131600 [exp] 426 / 1e-142 AT2G30520 821 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Potri.007G112600 [exp] 376 / 5e-122 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.016G090400 [exp] 371 / 5e-121 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 371 / 8e-121 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011082 [exp] 626 / 0 AT5G67385 476 / 2e-162 Phototropic-responsive NPH3 family protein (.1) Lus10014858 [exp] 526 / 0 AT5G67385 489 / 2e-168 Phototropic-responsive NPH3 family protein (.1) Lus10025928 [exp] 480 / 2e-163 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10011532 [exp] 452 / 2e-154 AT5G67385 427 / 2e-144 Phototropic-responsive NPH3 family protein (.1) Lus10019290 [exp] 434 / 3e-147 AT5G67385 402 / 6e-135 Phototropic-responsive NPH3 family protein (.1) Lus10029102 [exp] 435 / 5e-146 AT2G30520 825 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Lus10013057 [exp] 434 / 9e-146 AT2G30520 825 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Lus10005943 [exp] 410 / 7e-136 AT1G03010 881 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 356 / 1e-114 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 353 / 1e-113 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0033 [poplar] [flax] PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.007G053200.2 pacid=42765624 polypeptide=Potri.007G053200.2.p locus=Potri.007G053200 ID=Potri.007G053200.2.v4.1 annot-version=v4.1 ATGTCCTCTAAAAAGAAGGAGCTTCAGTCCACTGCCATGAAGAGAACCAGTGAATGGATTTTTTCCCAGGAAATCCCCAGTGATGTCACGGTTCATGCTG GAGGAGCTTCTTTTTCATTGCACAAGTTTCCGTTAGTCTCGAAGAGCGGATACATTAGGAAAATGGTGTCAGAATCTAGTGATGCTGATCTTTCTGAGAT AAAAATCCCTAATGTCCCTGGCGGGGCAGAAGCATTTGAGCTAGCGGCAAAGTTCTGTTATGGAATTAATTTTGAAATTAGTACAGAAAACATTGCCATG CTTCGATGTGTGGCAGAGTATCTAGAGATGACTGAGGACTATGCAGTTGGAAATTTAGTGTCAAGGACTGATGCGTATTTGAATGAAGTGGCACTAAAGA GCCTAGCAGGAGCAGTTTCAGTTTTACATCTCTCAGAAAACCTCCTCCCAATGGCAGAGAAAGTGAAATTGGTAAGCCGATGCTTAGATGCAATAGCACT TGCAGCCTGCAAAGAAAGCCAATTTTCAATGTCTGGAAGGTCCGATAGTGGCAATGAGGTTGTGATTTCTTCCATTGTGTCTCAACCAAAGCCCATTGTT GATTGGTGGGCTGAAGATTTAACTGTTCTTAGAATTGATATTTTTCAAAGGGTTTTGATTGCAATGATGGCAAGAGGGTTTAAACAGTACGCTCTTGGTC CTGTACTAATGCTCTATGCGCAGAAATCTCTACGAGGTTTGGAAGCATTTGGGAAGGGAAGGAAGAAAATTGAGGCACAGCAAGAGCATGAGAAGAGGGT TGTTCTAGAAACAATAGTGAGTCTTCTACCAAGGGAAAAGAATGTACTGTCAGTTAGTTTCCTCTCTATGTTGCTTCGTGCTGCAATTTATCTTGAGACA ACAGTCGCTTGCCGGCTTGATTTGGAGAAGAGGATGGGCTTGCAATTAGGACAGGCTGCCTTGGATGATCTCTTGATTCCTTCATATTCTTTTACAGGGG ACACAATGTTTGATGTAGATACTGTTCAGCGGATCATGATGAATTACCTTGAGAATGAAGTTGAAGGAAACCGAATCGGTTACCATGCTGATGATGAATG TGGTGTTACTCTGCTAAGTGATATGGAACGAGTTGCGAAGCTGATGGAGAACTACCTAGCTGAAATAGCGTCCGACCGTAACTTGACAGTTTCAAAATTT ATTGGTCTAGCTGAAATTATTCCAGAACAATCAAGGGTAACAGAAGATGGGATGTATAGGGCCATAGATATATACCTCAAGGCCCATCCTGCTTTAAGTG ACATGGAGAGGAAGAAAGTCTGCAGCTTGATGGATTGTCAGAAACTATCTCGGGAGGCCTGTGCTCATGCTGCTCAGAATGATCGGCTTCCAGTTCAAAC TGTGGTCCAAGTGCTTTACTATGAGCAACAACGCCTTCGGGATGTCATGAATGGCAATCTCATGGGTGGAGATTCCCCTGATCTTCCTCCCAAAGTAAAT ATATTCTCCACCGATATTCGTCCTGTTTCTGATGAGCTCTCCAGCTTACGCAGAGAGAACGAAGATCTGAAAATAGAGCTAGTAAAAATGAAAATGAAAA TGAAGGAGATTGAAAGAGCTACTGTCGTATCAACTACAAGCAGTCCATCTGCTGATAAACCTCCTCTGCCTCGAAAATCATTTATTAACTCTGTGTCAAA AAAGCTTGGAAGGATTAATCCTTTCGTGCGAGCTGATGGATTCCCACTCTCCAATACCAAGGCTCGAACTAGACCAAGCAAAGATCGCCGGCATTCAATA TCTTGA
AA sequence Show only first row Show all	>Potri.007G053200.2 pacid=42765624 polypeptide=Potri.007G053200.2.p locus=Potri.007G053200 ID=Potri.007G053200.2.v4.1 annot-version=v4.1 MSSKKKELQSTAMKRTSEWIFSQEIPSDVTVHAGGASFSLHKFPLVSKSGYIRKMVSESSDADLSEIKIPNVPGGAEAFELAAKFCYGINFEISTENIAM LRCVAEYLEMTEDYAVGNLVSRTDAYLNEVALKSLAGAVSVLHLSENLLPMAEKVKLVSRCLDAIALAACKESQFSMSGRSDSGNEVVISSIVSQPKPIV DWWAEDLTVLRIDIFQRVLIAMMARGFKQYALGPVLMLYAQKSLRGLEAFGKGRKKIEAQQEHEKRVVLETIVSLLPREKNVLSVSFLSMLLRAAIYLET TVACRLDLEKRMGLQLGQAALDDLLIPSYSFTGDTMFDVDTVQRIMMNYLENEVEGNRIGYHADDECGVTLLSDMERVAKLMENYLAEIASDRNLTVSKF IGLAEIIPEQSRVTEDGMYRAIDIYLKAHPALSDMERKKVCSLMDCQKLSREACAHAAQNDRLPVQTVVQVLYYEQQRLRDVMNGNLMGGDSPDLPPKVN IFSTDIRPVSDELSSLRRENEDLKIELVKMKMKMKEIERATVVSTTSSPSADKPPLPRKSFINSVSKKLGRINPFVRADGFPLSNTKARTRPSKDRRHSI S

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67385			Phototropic-responsive NPH3 fa...		Potri.007G053200 [exp]	0	1
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Potri.012G080900 [exp]	8.00	0.9110	DXR.1
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Potri.005G048200 [exp]	9.69	0.8618
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Potri.002G102900 [exp]	13.22	0.8713
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Potri.007G100200 [exp]	14.07	0.8811
AT3G21300			RNA methyltransferase family p...		Potri.001G195300 [exp]	24.04	0.8685
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Potri.008G133800 [exp]	27.82	0.8440	Pt-CABP1.1
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Potri.018G013800 [exp]	33.94	0.8678	Pt-COL1.2
AT2G30170			Protein phosphatase 2C family ...		Potri.001G282500 [exp]	43.37	0.8785
AT2G43945			unknown protein		Potri.013G084300 [exp]	44.72	0.8782
AT5G04440			Protein of unknown function (D...		Potri.008G030300 [exp]	52.00	0.8759

Compare expression of checked genes

Potri.007G053200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.