Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67390 100 / 4e-26 unknown protein AT1G26620 53 / 5e-08 Plant protein of unknown function (DUF863) (.1) AT1G13940 53 / 6e-08 Plant protein of unknown function (DUF863) (.1) AT1G69360 52 / 1e-07 Plant protein of unknown function (DUF863) (.1) AT5G07790 51 / 2e-07 unknown protein AT5G57340 49 / 4e-07 unknown protein AT5G61300 42 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G145800 [exp] 300 / 1e-104 AT5G67390 87 / 1e-21 unknown protein Potri.004G125900 [exp] 53 / 5e-08 AT1G69360 149 / 2e-36 Plant protein of unknown function (DUF863) (.1) Potri.003G112000 [exp] 46 / 8e-06 AT1G62530 109 / 4e-26 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2) Potri.017G088900 [exp] 45 / 1e-05 AT1G69360 152 / 2e-37 Plant protein of unknown function (DUF863) (.1) Potri.010G162000 [exp] 45 / 2e-05 AT1G13940 437 / 2e-136 Plant protein of unknown function (DUF863) (.1) Potri.008G092800 [exp] 45 / 2e-05 AT1G13940 459 / 2e-144 Plant protein of unknown function (DUF863) (.1) Potri.018G090000 [exp] 44 / 2e-05 AT5G57340 72 / 8e-15 unknown protein Potri.001G121200 [exp] 42 / 0.0003 AT1G62530 106 / 5e-25 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011080 [exp] 133 / 7e-39 AT5G67390 91 / 7e-23 unknown protein Lus10019291 [exp] 92 / 1e-22 AT5G67390 95 / 2e-24 unknown protein Lus10011531 [exp] 87 / 4e-21 AT5G67390 97 / 3e-25 unknown protein Lus10014857 [exp] 48 / 4e-07 ND 39 / 3e-04 Lus10036807 [exp] 50 / 5e-07 AT1G69360 254 / 9e-73 Plant protein of unknown function (DUF863) (.1) Lus10037122 [exp] 48 / 2e-06 AT1G69360 257 / 8e-74 Plant protein of unknown function (DUF863) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G053300.1 pacid=42765281 polypeptide=Potri.007G053300.1.p locus=Potri.007G053300 ID=Potri.007G053300.1.v4.1 annot-version=v4.1 ATGGAGAAATTCCTCAAGCCCTACGACAAGGAATACATGAGAATGGCCATGTTAAAACATGAAGAAACATTCAAAGAGCAGGTATGTGAACTTCATCGTC TATATCGAACCCAAAAAAATATGATGAGAAACATTGAAAGCAACAGGCCTGGTGCGAGGAGTCGAGAATTATGGAGCTCAAAAAATGGCTTTAGCTTTAA TCAGACTAATCATGCACGCGATATGCAGCAGAAGTCGATAGCGAAACTTGACTTGGAGAGGCCTGCTGAACTTTATGTTGTAGAATCAAATGCAGATACA GTATTAGAGCTAATAGATGAGAGTGAGATTCAGCTAACACTGGGACCTTCGAGCTATAACAGAAGGAGGAAACGTGAAACACCACTAACTTCAGATTCAG GACCAAGCCTCTCTTCGACTTCCACTGGATCCAGTCATTTAAACAGGACAAGTTCCTTGACAAATCAAAAGATCAACACCAGAAGAGAAGAGTTAAGTGG CCCTGAATTGGGGCTTTTCCAGGTTCCTGACATTACCTTGGGGTACCAAAATGGAAGTAAAAACAGTATTGGCGTTGAAGAACAAGTAGGGCAGGATAGA CTAAAACAACCTCCTTGGCTTTGTCAAGTTTTGCGTCTGAACATCGCTTGA
AA sequence Show only first row Show all	>Potri.007G053300.1 pacid=42765281 polypeptide=Potri.007G053300.1.p locus=Potri.007G053300 ID=Potri.007G053300.1.v4.1 annot-version=v4.1 MEKFLKPYDKEYMRMAMLKHEETFKEQVCELHRLYRTQKNMMRNIESNRPGARSRELWSSKNGFSFNQTNHARDMQQKSIAKLDLERPAELYVVESNADT VLELIDESEIQLTLGPSSYNRRRKRETPLTSDSGPSLSSTSTGSSHLNRTSSLTNQKINTRREELSGPELGLFQVPDITLGYQNGSKNSIGVEEQVGQDR LKQPPWLCQVLRLNIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67390			unknown protein		Potri.007G053300 [exp]	0	1
AT5G23170			Protein kinase superfamily pro...		Potri.004G221800 [exp]	2.44	0.8361
AT1G34300			lectin protein kinase family p...		Potri.016G102700 [exp]	3.87	0.8414
					Potri.007G145550 [exp]	4.47	0.7882
AT5G38530		TSBtype2	tryptophan synthase beta type ...		Potri.017G109600 [exp]	8.36	0.8253
AT2G47115			unknown protein		Potri.014G115200 [exp]	9.79	0.8286
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Potri.010G207800 [exp]	13.41	0.7870
AT1G51405			myosin-related (.1)		Potri.001G256700 [exp]	15.19	0.7987
AT3G45650		NAXT1	nitrate excretion transporter1...		Potri.008G045100 [exp]	16.88	0.8354
AT5G17760			P-loop containing nucleoside t...		Potri.005G119900 [exp]	18.38	0.7818
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Potri.010G052400 [exp]	22.24	0.7773

Compare expression of checked genes

Potri.007G053300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.