Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HLS1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23060 597 / 0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) AT4G37580 572 / 0 UNS2, COP3, HLS1 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT5G67430 470 / 1e-165 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G30090 285 / 5e-93 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G146100 [exp] 699 / 0 AT2G23060 609 / 0.0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.001G044100 [exp] 367 / 1e-124 AT4G37580 372 / 4e-127 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.003G182500 [exp] 359 / 1e-121 AT2G23060 368 / 3e-125 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.009G074200 [exp] 332 / 3e-111 AT2G30090 383 / 6e-132 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.001G279400 [exp] 325 / 1e-108 AT2G30090 374 / 2e-128 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.010G144700 [exp] 244 / 5e-77 AT2G23060 224 / 2e-69 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002468 [exp] 596 / 0 AT2G23060 589 / 0.0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10025191 [exp] 594 / 0 AT2G23060 584 / 0.0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10026088 [exp] 351 / 2e-118 AT2G23060 369 / 1e-125 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10002314 [exp] 333 / 4e-112 AT4G37580 335 / 3e-113 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10016904 [exp] 174 / 2e-50 AT4G37580 181 / 3e-53 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [poplar] [flax] Acetyltrans PF00583 [poplar] [flax] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Potri.007G054200.1 pacid=42766796 polypeptide=Potri.007G054200.1.p locus=Potri.007G054200 ID=Potri.007G054200.1.v4.1 annot-version=v4.1 ATGGGAGAAGAGAGAGTGGATATGATAGTGGTTAGAGAATTTGATCCAAGAAAAGATGGAGTTGGTGTTGAAGAAGTCGAGAGAAGATGTGAGGTTGGTC CCGGCGGCAAGCTCTCTCTCTTTACCGACCTCTTGGGTGACCCAATTTGCAGGGTCCGCAATTCCCCTGCTTTCCTCATGCTGGTGGCCGAGATAGGTGA AGAGATAGTGGGGATGATAAGAGGTTGCATCAAAACCGTTACATGTGGCAAAAAGCTTTCAAGAACTGTGAAAAACAACTACTCCTACAATGTCATCAAT AATAATGACCTTTCCAAACCCGTCCCTGTTTACACCAAAGTTGCTTACATTTTAGGCCTTCGTGTCTCTCCTTCACACCGGAGGATGGGCATAGGCCTAA AATTGGTACATCAAATGGAAGATTGGTTTCGTCAAAACGGCGCTGAATATTCCTACATAGCAACTGAAAACGACAACCACGCTTCCGTTAAGCTCTTCAC CGACAAATGCGGCTACTCCAAGTTCCGTACTCCCTCGATCCTAGTCAACCCGGTCTTCGCTCACCGGGTCCCTGTATCAAACCGTGTAACAATCATCAAA CTCACCCCGCACGACGCCGAGTTGCTGTACCGGCGACGATTCGCCACCACCGAGTTCTTCCCTCGGGACATTGACTCCGTCCTCAAGAACAAGCTGAATG TGGGGAATTTCTTGGCCGTGCCACGTGGCAGTTTAAAATCAGGGTCGTGGGCCGGGCCGGACAGCTTTCTATCCGACCCGCCGGAGTCGTGGGCTGTGCT CAGCGTGTGGAACTGCAAGGATGTTTTTAGACTTGAAGTGCGTGGCGCGTCGCGCGTGAAGCGGACATTTGCTAAAACAACGAGAGTTGTCGACAAGGCG TTGCCATTCTTGAGGTTGCCTTCGGTACCTGCGGTGTTTAGGCCCTTCGGGTTGTATTTTATGTATGGCTTGGGGGGTGAGGGACCACGCGCAGCTAAAA TGATGAAAGCGTTGTGTGGTCACGTGCATAATTTGGCTAAAGAGAGTGGGTGTGGAGTGGTGGTTACAGAGGTAGCAAATCGCGAACCGCTCAAGTTAGG AATACCACACTGGAAAATGCTATCGTGCGCAGAGGATTTGTGGTGTATTAAGAGGCTTGGGGAGGACTATAGCGACGGGTCTGTTGGTGACTGGACTAAA TCACCGCCCGGCTTGTCAATTTTTGTTGACCCTAGAGAGTTCTAA
AA sequence Show only first row Show all	>Potri.007G054200.1 pacid=42766796 polypeptide=Potri.007G054200.1.p locus=Potri.007G054200 ID=Potri.007G054200.1.v4.1 annot-version=v4.1 MGEERVDMIVVREFDPRKDGVGVEEVERRCEVGPGGKLSLFTDLLGDPICRVRNSPAFLMLVAEIGEEIVGMIRGCIKTVTCGKKLSRTVKNNYSYNVIN NNDLSKPVPVYTKVAYILGLRVSPSHRRMGIGLKLVHQMEDWFRQNGAEYSYIATENDNHASVKLFTDKCGYSKFRTPSILVNPVFAHRVPVSNRVTIIK LTPHDAELLYRRRFATTEFFPRDIDSVLKNKLNVGNFLAVPRGSLKSGSWAGPDSFLSDPPESWAVLSVWNCKDVFRLEVRGASRVKRTFAKTTRVVDKA LPFLRLPSVPAVFRPFGLYFMYGLGGEGPRAAKMMKALCGHVHNLAKESGCGVVVTEVANREPLKLGIPHWKMLSCAEDLWCIKRLGEDYSDGSVGDWTK SPPGLSIFVDPREF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23060			Acyl-CoA N-acyltransferases (N...		Potri.007G054200 [exp]	0	1	Pt-HLS1.2
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Potri.002G183000 [exp]	5.47	0.8162
AT2G41480			Peroxidase superfamily protein...		Potri.006G069600 [exp]	5.56	0.8200
AT2G38450			unknown protein		Potri.016G128700 [exp]	12.16	0.8160
AT5G17600			RING/U-box superfamily protein...		Potri.006G144200 [exp]	12.40	0.8047
AT5G23160			unknown protein		Potri.013G149300 [exp]	13.34	0.8189
AT1G29160	DOF	AtDof1. 5	Dof-type zinc finger DNA-bindi...		Potri.004G056900 [exp]	15.74	0.8061	Pt-DOF2.2
					Potri.003G183150 [exp]	18.54	0.7740
AT2G41140		CRK1, ATCRK1, A...	CDPK-related kinase 1 (.1)		Potri.016G035500 [exp]	21.02	0.7879	CRK1.2
AT3G61550			RING/U-box superfamily protein...		Potri.014G091000 [exp]	22.22	0.7976
AT5G08350			GRAM domain-containing protein...		Potri.007G075700 [exp]	23.45	0.7685

Compare expression of checked genes

Potri.007G054200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.