Plant FIBer expression Database

Potri.007G054500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G185950
[exp]
76 / 5e-14 AT5G28780 213 / 3e-61 PIF1 helicase (.1)
Potri.011G042150
[exp]
67 / 2e-11 AT5G28780 174 / 1e-47 PIF1 helicase (.1)
Potri.008G167001
[exp]
58 / 4e-09 AT5G28780 220 / 2e-70 PIF1 helicase (.1)
Potri.012G032376
[exp]
59 / 6e-09 ND /
Potri.009G007400
[exp]
55 / 5e-08 AT5G28780 208 / 2e-65 PIF1 helicase (.1)
Potri.006G157501
[exp]
48 / 2e-05 AT5G28780 196 / 2e-57 PIF1 helicase (.1)
Potri.001G165240
[exp]
46 / 7e-05 AT5G28780 171 / 1e-46 PIF1 helicase (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF13604 AAA_30 AAA domain
Representative CDS sequence
>Potri.007G054500.3 pacid=42765711 polypeptide=Potri.007G054500.3.p locus=Potri.007G054500 ID=Potri.007G054500.3.v4.1 annot-version=v4.1
ATGCTCTCGTTGCTGCCGTTTTGCTTCCTTGAACCATTAAGGTCCGAGTCTAAGCTCCTTCTCTATCAGAAGCAGACGTATGATAACGCTCAAAGACTCT
ACTTTTCAGCATGTAAAGAAAAGCTTGAATGCGCTAGAAGTATGAAGTTTTTTAGCTCTGCAATAATAGCTGTATATAGAAGAAGTTTTAGCACTAAAAG
CAGCAGAACCACAAAATATGCTCAAAGTGTTTGCCAGAATCGAATCAAGAAGGAAACCAATAGGATCCCCAAGGACACAAAAACCCACCAACCTTTATTT
GAATGGGCCCAAGAACAAAAAAATATTTTTTCTCATGTTCACAGAGGTGCTTCTGTGTTTATCACGGGCTCCGCCGGAACTGGAAAGACAGTTTTGCTTA
AGCACATTATCGACATTCTGAAGGATGTTCATGGTAAGTCTAAGGTTTTTGTCACGGCATCCACTGGAATTGCTGCCTGTGCACTTCAAGGGCAAACACT
TCACTCCTTTGCCAGCATTGGAATCCAAAATGCTGATTCTGGAACTTTGCTGGATAAGGTTAAAATGAATAAGCATGCTTGCAAAAGATGGAAAAAGGCG
AAGGCATTGGTTATAGATGAAATTAGTATGATCAGTGCTGATTTGTTCGAGAGCCTGGAATATATTGCTAGAGATATACGGGGATCGGAGGTGGTATGGG
GTGGAATACAGCTTATTGTCTGTGGGGATTTCTTTCAGCTACCACCAGTTATCAAACAACAGAAATTATCAGGCAAAGAATTTGCATTTGAAGCTGATTG
TTGGAATGCAAGCTTTGACTTGCAGGTTGAGCTTACTCAGGTTTTTAGGCAGTCAGACCCTCGGCTTATCAAGATGCTTCAGGGAATAAGGAAAGGGGAG
ACTGACGCAGAGGACTTGCAGCTTCTAGAAGAATCTTGCTCCATGAACAAGCAGGATTCTTTGGTAGTCTGGCTCTATCCGAGAATTAATGATGTGGAGA
AAGTAAATGAGGAGAGAATGAAAAGCTTGGGTGAGAGTACTGTAACTTATGCAGCTGCTGATAGTGGCCTCGAACATAGGAAGAAACAACTCAACCAAGG
GATTGTACCTGACCAACTTGTACTCTGTGTAGGTGCAAGGGTAATGTTGATCATGAATTTGAATATTGAACGTAATCTTTGTAATGGTGCCACTGGTACA
GTTACAGGATTTGTTCCTGTGGAGGATAAAAATGCTAGAAAGTCTGATATTCTCTTCCCACAAGTTAAATTTGATCGTGGACCTGAAATCTTGATTGAAC
CTCAAAAATTTGAAATTTTTGAGGGAGATATTGTAGTTGCTTGGAGATATCAGATACCTTTGATATTAGCATGGGCTATCAGCATACATAAGTGCCAAGG
GATGACTCTTGATCATGCTCAAACAGATCTCTCAAGGGCTTTTGGCTATGGAATGGTCTATGTGGCACTTTCCCGAGTAAGGAGCTTGGAAGGCCTTCAT
TTGTCTGGTTTCACTCCATCAAAGATCAAGGCACACCCAAAAGTTCTGCTATTCTATAAAAGTTTTACTTCATCAAACCTCTCTCATACTGAATTCTCAT
TAACACACCGAGTTAGGAAATAA
AA sequence
>Potri.007G054500.3 pacid=42765711 polypeptide=Potri.007G054500.3.p locus=Potri.007G054500 ID=Potri.007G054500.3.v4.1 annot-version=v4.1
MLSLLPFCFLEPLRSESKLLLYQKQTYDNAQRLYFSACKEKLECARSMKFFSSAIIAVYRRSFSTKSSRTTKYAQSVCQNRIKKETNRIPKDTKTHQPLF
EWAQEQKNIFSHVHRGASVFITGSAGTGKTVLLKHIIDILKDVHGKSKVFVTASTGIAACALQGQTLHSFASIGIQNADSGTLLDKVKMNKHACKRWKKA
KALVIDEISMISADLFESLEYIARDIRGSEVVWGGIQLIVCGDFFQLPPVIKQQKLSGKEFAFEADCWNASFDLQVELTQVFRQSDPRLIKMLQGIRKGE
TDAEDLQLLEESCSMNKQDSLVVWLYPRINDVEKVNEERMKSLGESTVTYAAADSGLEHRKKQLNQGIVPDQLVLCVGARVMLIMNLNIERNLCNGATGT
VTGFVPVEDKNARKSDILFPQVKFDRGPEILIEPQKFEIFEGDIVVAWRYQIPLILAWAISIHKCQGMTLDHAQTDLSRAFGYGMVYVALSRVRSLEGLH
LSGFTPSKIKAHPKVLLFYKSFTSSNLSHTEFSLTHRVRK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.007G054500
[exp]
0 1
AT3G26922 F-box/RNI-like superfamily pro... Potri.011G104300
[exp]
1.41 0.8973
AT3G27700 C3HZnF zinc finger (CCCH-type) family... Potri.001G351532
[exp]
1.73 0.8770
AT5G09580 unknown protein Potri.001G285000
[exp]
2.00 0.8794
Potri.010G111100
[exp]
5.00 0.8571
AT5G43500 ATARP9 actin-related protein 9 (.1.2) Potri.008G165000
[exp]
5.65 0.8362
AT3G01820 P-loop containing nucleoside t... Potri.015G093200
[exp]
6.00 0.8322
AT1G64720 CP5 Polyketide cyclase/dehydrase a... Potri.012G021400
[exp]
8.77 0.8323
AT1G54130 AT-RSH3, RSH3, ... RELA/SPOT homolog 3 (.1) Potri.013G089000
[exp]
10.39 0.8585
AT1G36390 Co-chaperone GrpE family prote... Potri.002G090000
[exp]
11.22 0.8492
AT1G02020 nitroreductase family protein ... Potri.002G146100
[exp]
12.00 0.8356

Potri.007G054500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.