Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67470 684 / 0 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT3G25500 543 / 3e-178 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT2G43800 472 / 1e-152 Actin-binding FH2 (formin homology 2) family protein (.1) AT3G05470 415 / 5e-131 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G54650 388 / 1e-120 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT4G15200 362 / 2e-112 AFH3 formin 3 (.1.2) AT1G70140 330 / 2e-100 ATFH8 formin 8 (.1) AT5G48360 326 / 2e-98 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G59910 298 / 6e-87 Actin-binding FH2 (formin homology 2) family protein (.1) AT3G07540 277 / 4e-80 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G140200 [exp] 546 / 3e-180 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.017G009900 [exp] 546 / 3e-180 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.002G240232 [exp] 549 / 1e-179 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.014G174700 [exp] 536 / 1e-174 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.013G017900 [exp] 434 / 3e-137 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.005G026300 [exp] 426 / 3e-134 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.011G131700 [exp] 404 / 1e-125 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.001G416100 [exp] 400 / 2e-124 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G119900 [exp] 387 / 3e-120 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025195 [exp] 897 / 0 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011524 [exp] 838 / 0 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10019298 [exp] 838 / 0 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10002149 [exp] 526 / 4e-171 AT3G25500 717 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Lus10008739 [exp] 526 / 5e-171 AT5G67470 711 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10004505 [exp] 427 / 4e-136 AT3G05470 628 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10029897 [exp] 407 / 1e-128 AT3G05470 618 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10031496 [exp] 405 / 4e-128 AT3G05470 608 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10015175 [exp] 400 / 7e-126 AT3G05470 635 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10011168 [exp] 395 / 6e-123 AT5G54650 640 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [poplar] [flax] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Potri.007G054900.1 pacid=42765745 polypeptide=Potri.007G054900.1.p locus=Potri.007G054900 ID=Potri.007G054900.1.v4.1 annot-version=v4.1 ATGAAAGCTCATAACTTGAGCCTCATTTTGATTGTATTATCATCATTGACAACACCCGAAAGTGCAACCATAATTCAAGACTCTAACATCCAACGAAGAA TTCTCCACCAGCCATTATACCCAGTCGCTTCTGCACCACCACCAGCCACCGACTCACAACCACCGCCACCGCCACCAGATAGCTCAGCTATTGCAAACCC AGACCAGCCCTTTTTCCCTGAAGTCCCAAATGGGCAAACCCCAGATCTTGGCCAGCCACCACCAGCATCAGCAGTCAACGGGACCATACCAATCCCAACA GCAACACAGCCAGCCAAGCCTGCTAAGAAAGTGGCAATTGCAATCTCAGTTGGGATTGTCACTTTAGGGATGCTGTCAGCTCTTGCATTCTTTTTGTACC GACACCGGGCTAAGCATCCAAGAGAATCTCAAAAGCTTGTCGGAGGCAATTCTCAAAGATTTGCAGATGAATCTAGAGTTCCCCCGTCAAGTTTCCTGTA CATAGGAACTGTTGAACCAAGCAGGGCATCAGCTACTGAAGTAAATGGAACAACAACAACAACAAACGGAGCCAATACTTCACCTTATCATAGACTAAAT TCAATCAAAAGATCTGATAATTATAGGCCTAGTCCTGATTTGCAGCCACTACCACCGCTACCTAAACCTCCTCCTCCTCCTCCTCAATACGAGAATGAGA ATTTTCCATCCCCAACATCATCAATATCGGATGAGGAGAGTCTTGACACAGCTTTTTATACGCCACAGGGCTCCACAGTTAGCAATGACGATTCCTACTA CACACCTGTTCTGGTGCGGCCTGCTAATGCTGCTAGGAATGATGTCCGTGTCCAAGCCACAACTTCTGTTCCGCACTCTAAAAGAACCTCTCCGAAATCA AGATTTTCTTCCATAACTTCACCAGAAATGAAGCATGTCATAATTCCTTCGATCAAGCAGCCATCATTAGCACCACCGCCGCCTCCACCACCACCGCCAT TGCCGCATCAGGATAAAGTCCAGGTTCTTGAGTCAACAACTTCATATTTTTCTAAAAGGCCAAAATTTCCAGTCCCACCACCACCACCGAATATGGAACT TCTTCGATCCATATACAATCATCAGTCAAGTAAAATTCCACCTCCACCTCCACCTCCACCTCCACCTCCTCCGCCTCCGGCTCCGGCTCCACTGTCAACA TCAAGAAAGATAGGATCTTTAGAAACAGCTAAAACATTGGTTGTTTCTTCGATGCCTGCAACAGTAATGGCGAAGCAAAAGCCCTCAGCTTCTAGTCCCA AAGCCATTTTGAAGACCGGAATAACAAAAACTACCGAGGAAGTTAATAAAGGAGCCAGTTCCTCAGAGAGGAATGATGCAGATGACAATGATGGAGAAAA GCCCAAGTTAAAGCCTCTGCATTGGGACAAAGTGCGGGCATCCTCAGACCGAGCCACAGTGTGGGATCAGCTTAAATCCAGCTCATTTCAATTAAATGAG GACATGATGGAGAGTCTTTTTGGCTGTAATTCTGCGAATTCGGTACCAAAAGAAGCTACAAGAAAATCGGTTCTGCCTCCTGCTGAGCATGAAAACAGAG TGTTGGATCCAAAGAAGTCGCAGAACATAGCGATACTGTTACGAGCACTGAACGTGACACGAGATGAAGTGTCTGAAGCTCTTTTGGATGGCAACCCAGA AAGCTTGGGTGCGGAGCTTTTGGAAACTCTAGTAAAGATGGCCCCAACCAAGGAGGAAGAAATAAAACTTCGAGAGTACAGTGGTGACATCTCCAAACTG GGATCTGCAGAACAATTTCTCAAGACAGTACTTGATATCCCATTTGCTTTTAAAAGAGTTGAGGCGATGCTATACAGAGCCAATTTTGATACAGAAGTTA AATATTTGAGGAAATCTTTTCAAACCCTAGAGGCAGCAAGTAAGGAATTGAAGAATAGCCGGTTATTCCTCAAACTCCTTGAAGCTGTTCTCAGGACAGG GAACCGGATGAATGTTGGCACAAATCGTGGTGATGCTAAAGCATTTAAGCTTGATACACTCTTAAAACTTGTAGATATAAAAGGAACTGATGGGAAAACA ACATTACTCCACTTTGTGGTCCAGGAAATTATTAGATCTGAAGGCACAAGTACCGATTCTACAAATGAGAAATTGCAAGACAGTACACTCTCCAAAATGA AGGAGGATGATTTTGGGAAACAAGGATTGCAGGTTGTGACAGGACTGAGTAGAGATCTCAGCAATGTAAGAAAGGCAGCTGGAATGGACTCTGATGTATT AAGTAGCTATGTTTCAAAACTCGCAATGGGGCTCGAGAAAGTCAGATTGGTTTTGCAGTATGACAAGCCGGATATGCAGGGGAAATTCTTTCACTCAATG AAGCTGTTTCTAAGAGGCGCTGATGAGGAAATTAGCAGGATTAAGTCTGATGAAAGGAAGGCTTTGTCACTGGTGAAAGAGGTCACAGATTATTTCCATG GGGATACAGCTAAGGAGGAAGCTCACCCGTTCAGAATTTTCGTGATAGTAAGAGATTTCCTAAATGTATTGGATCATGTCTGCAAGGAAGTAGGGAAAAT GCAGGACAGAACAATGGTGGGCTCAGCTAGATCCTTTCGGATATCAGCGACAGCTTCACTACCGGTTCTCAACAGATTTAATGTTAGACAAGATAGAAGT TCAGATGAGGAAAGCTCCTCTCCTTAA
AA sequence Show only first row Show all	>Potri.007G054900.1 pacid=42765745 polypeptide=Potri.007G054900.1.p locus=Potri.007G054900 ID=Potri.007G054900.1.v4.1 annot-version=v4.1 MKAHNLSLILIVLSSLTTPESATIIQDSNIQRRILHQPLYPVASAPPPATDSQPPPPPPDSSAIANPDQPFFPEVPNGQTPDLGQPPPASAVNGTIPIPT ATQPAKPAKKVAIAISVGIVTLGMLSALAFFLYRHRAKHPRESQKLVGGNSQRFADESRVPPSSFLYIGTVEPSRASATEVNGTTTTTNGANTSPYHRLN SIKRSDNYRPSPDLQPLPPLPKPPPPPPQYENENFPSPTSSISDEESLDTAFYTPQGSTVSNDDSYYTPVLVRPANAARNDVRVQATTSVPHSKRTSPKS RFSSITSPEMKHVIIPSIKQPSLAPPPPPPPPPLPHQDKVQVLESTTSYFSKRPKFPVPPPPPNMELLRSIYNHQSSKIPPPPPPPPPPPPPPAPAPLST SRKIGSLETAKTLVVSSMPATVMAKQKPSASSPKAILKTGITKTTEEVNKGASSSERNDADDNDGEKPKLKPLHWDKVRASSDRATVWDQLKSSSFQLNE DMMESLFGCNSANSVPKEATRKSVLPPAEHENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPTKEEEIKLREYSGDISKL GSAEQFLKTVLDIPFAFKRVEAMLYRANFDTEVKYLRKSFQTLEAASKELKNSRLFLKLLEAVLRTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKT TLLHFVVQEIIRSEGTSTDSTNEKLQDSTLSKMKEDDFGKQGLQVVTGLSRDLSNVRKAAGMDSDVLSSYVSKLAMGLEKVRLVLQYDKPDMQGKFFHSM KLFLRGADEEISRIKSDERKALSLVKEVTDYFHGDTAKEEAHPFRIFVIVRDFLNVLDHVCKEVGKMQDRTMVGSARSFRISATASLPVLNRFNVRQDRS SDEESSSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Potri.007G054900 [exp]	0	1
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Potri.005G172900 [exp]	8.00	0.6992
AT1G26150		ATPERK10	proline-rich extensin-like rec...		Potri.010G132900 [exp]	9.89	0.7216
					Potri.010G080501 [exp]	20.78	0.6791
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Potri.016G059300 [exp]	26.07	0.6905
AT4G36430			Peroxidase superfamily protein...		Potri.019G125500 [exp]	29.29	0.6982	RIP1.2
AT1G67960		POD1	POLLEN DEFECTIVE IN GUIDANCE 1...		Potri.010G103400 [exp]	30.65	0.6308
AT2G27460			sec23/sec24 transport family p...		Potri.009G163300 [exp]	33.67	0.6899
AT1G63450		RHS8	root hair specific 8 (.1)		Potri.003G126001 [exp]	38.72	0.6157
AT3G58790		GAUT15	galacturonosyltransferase 15 (...		Potri.014G142000 [exp]	43.45	0.6008
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Potri.008G166500 [exp]	46.32	0.6504

Compare expression of checked genes

Potri.007G054900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.