Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64960 1128 / 0 HEB1 hypersensitive to excess boron 1, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002459 [exp] 1006 / 0 AT1G64960 882 / 0.0 hypersensitive to excess boron 1, ARM repeat superfamily protein (.1) Lus10025197 [exp] 208 / 7e-60 AT1G64960 137 / 7e-36 hypersensitive to excess boron 1, ARM repeat superfamily protein (.1) Lus10025198 [exp] 129 / 9e-35 AT1G64960 105 / 7e-28 hypersensitive to excess boron 1, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12422 [poplar] [flax] Condensin2nSMC Condensin II non structural maintenance of chromosomes subunit
Representative CDS sequence Show only first row Show all	>Potri.007G055400.1 pacid=42766126 polypeptide=Potri.007G055400.1.p locus=Potri.007G055400 ID=Potri.007G055400.1.v4.1 annot-version=v4.1 ATGGAGAAGAGGCATTGTCATCCGTCTTCTCTCCATAACTCATCGCCGCAGGAATTCCTCTCCGCAGCCACAGAACTCAATCTCAAAGTCAAATCCTCAA AACGAACACTCAAATCCTTAATCCACTCTATCCCCTCCTCTTCTCCTCTATCTTCCTCTCTCCTCCCCTCTCTGCATACTTTCATTTCCGATTCTATCCT TTCCTTCCGCCACCCCACCAGCCCCCCTCCCTCTAAAAAACGCCGTCGATCCGGCCGTAAAAATAATACGGATGAAGAAGCCACTCTCAACCTCCACAAA CAACCACAACAACATAATCTCGAGAAGCTCCACCTTCTTGCTCACGTTGCTTTTCTATGCGTTTCGCATCCCAAGAAGGTGTTTTCGCCTCGGGATCTGT TGCCATCTGTTCAGTTGCTTCATGACAATTTGGTCTTTTTTGAGTCGGATTCGAGTTTGTTGTTGGAGATATCGAATTTATGTGAGGTTTATTGGAGGGA GAATTTACAGGGGAGAGAAATGTTGATTTCACAGTCTTTACCATTTCTGGTTTCGCGGTCTTTGACATTGAAGAAGAAAGTGGACGTTCATAGAGTTTAT GCTTTACGTGAGGCTTTTACTTTGTTTGATTTCGAGGATGAGAGCATTGAGGATTTGAAGATGTTGTTGATTCGGACTGTGATCGCGCCGATTTATTTGA AGACTGAGGATGGGAGGAAGTTCTTGGGGTTTATTTTTGGGTTGAGTATGCAGTTAATGAAGGAGGCATTGGCGATGATAAAGTCTCAGATTGCATTTGG TAGGAAGTCCATCCTGGAAGCATATGGAGTGGTGTTGTTTCGGGCATGGAAAGGGGTTGATGGGGTTTTGAAGGAGGAGTTTGAGGGTGGGTTCCTACAG GGTTTGATTGAGGGCTCGATATATGCGAATTCCAGGGTGTTTGCAGCTTCTGTTAGGAGGGTTTTGGGTGGGTTTGTTAGTCAAAGGATTACTGATGGGG TTGAAAAGTTGCTTTTTCGGCTTGCCGAGCCTGTGATATTTCGGTCCCTCCAGGTTGCCAATTCAAATGTTCGTCTTAATGCATTGCATTTACTTTTAGA TTTTTTCCCTCTTGAAGATCCTGATGCCATGAAAGAAGTAAAAGATACACTGCTTGATAAGCAGTTCTTTTTAATGGAGAGATTGATCATGGACGATTGT CCAGATGTAAGAGTTGTTGCAGTAGAAGGTTGTTTTCGTGTCCTTCATTTATTTTGGGAAATCATCCCCTCATCAACCATTACAAAGCTGCTTACAAAAA TATTTGATGACATGTCACACGATATATGCAATGAGGTTAGGCTTTCGACGGTGAATGGCACCATTTATTTGCTTGGAAATCCACAGTCTCATGAAATTCT TAAAGTTCTTCTACCAAGATTGGGGCATCTGATCCTGGATAGTGCTCTTTCTAGTCGTGCTGCTGTCATGGATCTCCTCCTCCTTATAAGGGATATCCGA TCCTTTCAATTTAATAAGGTGGTTGGTTTAGATGTGTTATTATCAACACTTGCAAATGATCATTCTCAGGTTGCACAGAAGATTACTAGATTGCTTATAC CATCATACTTTCCCTCAAAAGTTAGCATCGAAGAGGCATGCAATCGTTGTGTTACTCTTATTAAAAGGTCTCCCATGGCTGGTGCAAGGTTTTGTGAATT TGCCATGTTAGAGGGGGCATCTCCTAAGTCTCTCATGGAGCTTGTCAGAGTGTTGATCGGTTTGGTTTTGTCAAATGAAAAACTACTTGCAGATCAGATT GAGGGTTTACTTATTGCCGCTGCCTCCCTATGCAACAATCTAGTCAGTGAGCCTTGCTATAAGAATGCCCTTAAAGAGTTTTTCACCGGTGGAAAAGTAA AGTGCTTGTTTGCTGCTGCATCCACTGGGCATGCTCAACCATCTGTACTCAACATTTGTTCCGTTGTTTCTCCTGATGATGTTGCTGGGCTTGTTGAAGA ATGCATGAGCCTAGTTACTAATTGTTGCGGATTACCAAAGAATGTGGAAATGCAAGCTAAAGTAAGGTCCGCTCACAGATTATTGTTGTCTTATAGTGGC TTTGATGATATGTTCGATTCTTTAACAAGGCTTTTGCAAAAAGCTGCCTATCGTTGCCATGTTAAATTTGGAGTTGAAATACCAAAGCAGAGAGTTTCCC CTGGGAAAAGGAAGAAATGCAAGTCCTCAGTCAAAATCTCAGCCAAGAGGAAGCATGTAGGTGGGAAAAATTCAACCACTTTTGAGTATGATTACTCAAT TGCTGTTGGAATTGCTTGCCAGATTAAAGACCTGGTTGTTTCTAAGGACTCTCGGGAAGCTATTTTAGGGTCCCAAGCTCTAGAATCGTCATTTCTTGCT CTGAAGGTCATTTCAGAGGTCAGCATTGAGCACTGCATCTCCTGCGAGTATATGGACACATCACCTGTTTTGGCGTATTCAGGTCTTGCCTTGCATATGA GTCTTCAAAACATAAGCATTAGTACAGATGATAGTGGCAGCAAGAACAGTGAGGGGACTGACTCTTCATCAATTTTGGAGACGGTGTTGGACCAGACAGT GGATCACCTTCTTAATTGTATTGATAAGCTGCTCGGAGAAGTTAACATTGGGGAAACTCAAGCAGACGCATCTATTTCAAATGATGATGGATCTCTCTCT ACCAAAGAAAGGGGGATGTCAAATAAGGTGAAGATGCTTACTGCAGTGCTAAAGCTCATAGTTGATTCCATTGCAATGGGCCTTCTATCTCGTATTCATG GAAGGTGCTTGAACTTTACGTCTGCATATTTAAAACACATCATCTTTGCGTTAGAGCACCAATCTAGTGAAAAACTGCAATTTAAGGAGGATGAGTTGAA AGATTTTTTTCTGTGTCTGAAGAGCTCCTTCAGCTATGCAGCCAAGTTACTCAATCTGATCCTTCGTGACACCAGTGAAACTTCACCACTACTGCCAGAA GCTTTTGATCTTGTCAATGATATGCTTGATCTAATCACCTCAATTGAATTGCACTTGGGCTCTGGTTTTGCAGCAGGCCTGGTTGCTGCAGCCAAGTCTT GGCTGCCTGATCTGATTCTTGCATTGGGATCTCCGTGCATGCTAAACAAGACTCAAGTAGCAAGCGCATATATAACTGCATTAGATTGCATTAAGTCTGG TTATCCATCGTGGCCTATAATTTTAGCAAAGACTGAGCTTTATGAAATAAGAGAAGCTAACCCAGAAGAGGTGGATGATATAACTTCCGAACCAGAAGAA TTCCGTGCGTTTAAGAAATTCATGGAAATGATAGTTTCACTATTGAAGGGGAAGTTTAACATTCTGGATGCAGTTGGAGTGATTTTATTGACTGGCTCAG TTGTTGGCCTTGAAAGGAAGGACTTTGGAGTAGTATTGGGACTTCTACATTTTGTCTGTGTGAAGTTAGTTGGAGAAGAAGACAGGGAATGGAATGAACT GGATATGATGTTGGCTTCTCTGCCAGACATCTACCCTCAGATCGAGAGAGGGATTGAGGAACAGAGTGACGAAAATGCAAGGCAGAAATTATGCAGTGCC AGGATGTTGCTTGACCATGTTTGGTTTTACCATCTTTATGAAACCGGGAGGTTTTCTGCTATGAAAGAATAA
AA sequence Show only first row Show all	>Potri.007G055400.1 pacid=42766126 polypeptide=Potri.007G055400.1.p locus=Potri.007G055400 ID=Potri.007G055400.1.v4.1 annot-version=v4.1 MEKRHCHPSSLHNSSPQEFLSAATELNLKVKSSKRTLKSLIHSIPSSSPLSSSLLPSLHTFISDSILSFRHPTSPPPSKKRRRSGRKNNTDEEATLNLHK QPQQHNLEKLHLLAHVAFLCVSHPKKVFSPRDLLPSVQLLHDNLVFFESDSSLLLEISNLCEVYWRENLQGREMLISQSLPFLVSRSLTLKKKVDVHRVY ALREAFTLFDFEDESIEDLKMLLIRTVIAPIYLKTEDGRKFLGFIFGLSMQLMKEALAMIKSQIAFGRKSILEAYGVVLFRAWKGVDGVLKEEFEGGFLQ GLIEGSIYANSRVFAASVRRVLGGFVSQRITDGVEKLLFRLAEPVIFRSLQVANSNVRLNALHLLLDFFPLEDPDAMKEVKDTLLDKQFFLMERLIMDDC PDVRVVAVEGCFRVLHLFWEIIPSSTITKLLTKIFDDMSHDICNEVRLSTVNGTIYLLGNPQSHEILKVLLPRLGHLILDSALSSRAAVMDLLLLIRDIR SFQFNKVVGLDVLLSTLANDHSQVAQKITRLLIPSYFPSKVSIEEACNRCVTLIKRSPMAGARFCEFAMLEGASPKSLMELVRVLIGLVLSNEKLLADQI EGLLIAAASLCNNLVSEPCYKNALKEFFTGGKVKCLFAAASTGHAQPSVLNICSVVSPDDVAGLVEECMSLVTNCCGLPKNVEMQAKVRSAHRLLLSYSG FDDMFDSLTRLLQKAAYRCHVKFGVEIPKQRVSPGKRKKCKSSVKISAKRKHVGGKNSTTFEYDYSIAVGIACQIKDLVVSKDSREAILGSQALESSFLA LKVISEVSIEHCISCEYMDTSPVLAYSGLALHMSLQNISISTDDSGSKNSEGTDSSSILETVLDQTVDHLLNCIDKLLGEVNIGETQADASISNDDGSLS TKERGMSNKVKMLTAVLKLIVDSIAMGLLSRIHGRCLNFTSAYLKHIIFALEHQSSEKLQFKEDELKDFFLCLKSSFSYAAKLLNLILRDTSETSPLLPE AFDLVNDMLDLITSIELHLGSGFAAGLVAAAKSWLPDLILALGSPCMLNKTQVASAYITALDCIKSGYPSWPIILAKTELYEIREANPEEVDDITSEPEE FRAFKKFMEMIVSLLKGKFNILDAVGVILLTGSVVGLERKDFGVVLGLLHFVCVKLVGEEDREWNELDMMLASLPDIYPQIERGIEEQSDENARQKLCSA RMLLDHVWFYHLYETGRFSAMKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64960		HEB1	hypersensitive to excess boron...		Potri.007G055400 [exp]	0	1
AT4G17240			unknown protein		Potri.006G017200 [exp]	1.41	0.9565
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Potri.011G031200 [exp]	2.64	0.9599	ATK1.2
AT5G05240			Uncharacterised conserved prot...		Potri.019G058200 [exp]	4.47	0.9496
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Potri.008G084800 [exp]	10.09	0.9178	DIM.2
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Potri.002G080000 [exp]	10.24	0.9513
AT5G20850		ATRAD51	RAS associated with diabetes p...		Potri.006G135200 [exp]	10.95	0.9303
AT2G36200			P-loop containing nucleoside t...		Potri.016G077800 [exp]	13.67	0.9399
AT1G54385			ARM repeat superfamily protein...		Potri.019G033900 [exp]	14.14	0.9309
AT4G14310			Transducin/WD40 repeat-like su...		Potri.010G069200 [exp]	16.18	0.8449
AT5G12930			unknown protein		Potri.001G017100 [exp]	16.94	0.9446

Compare expression of checked genes

Potri.007G055400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.