Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ACA2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37640 1721 / 0 ACA2 calcium ATPase 2 (.1) AT2G22950 1699 / 0 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1) AT1G27770 1583 / 0 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) AT3G57330 1259 / 0 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT2G41560 1242 / 0 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT4G29900 893 / 0 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) AT5G57110 871 / 0 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT3G21180 867 / 0 ATACA9, ACA9 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) AT3G63380 766 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G22910 713 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G016600 [exp] 1596 / 0 AT1G27770 1686 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Potri.006G046500 [exp] 1232 / 0 AT3G57330 1451 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Potri.001G020600 [exp] 1232 / 0 AT2G41560 1455 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.016G043100 [exp] 1231 / 0 AT2G41560 1538 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.003G204000 [exp] 1211 / 0 AT2G41560 1398 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.018G139800 [exp] 912 / 0 AT4G29900 1566 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.006G072900 [exp] 905 / 0 AT4G29900 1549 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.010G250800 [exp] 879 / 0 AT3G21180 1575 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Potri.008G008100 [exp] 868 / 0 AT3G21180 1562 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011522 [exp] 1674 / 0 AT4G37640 1704 / 0.0 calcium ATPase 2 (.1) Lus10019300 [exp] 1590 / 0 AT4G37640 1628 / 0.0 calcium ATPase 2 (.1) Lus10018687 [exp] 1587 / 0 AT1G27770 1667 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10025199 [exp] 1569 / 0 AT4G37640 1591 / 0.0 calcium ATPase 2 (.1) Lus10007736 [exp] 1458 / 0 AT1G27770 1528 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10016366 [exp] 1259 / 0 AT2G41560 1463 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10035439 [exp] 1238 / 0 AT2G41560 1535 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10042040 [exp] 1227 / 0 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Lus10031053 [exp] 1201 / 0 AT2G41560 1480 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10001638 [exp] 895 / 0 AT4G29900 1599 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00689 [poplar] [flax] Cation_ATPase_C Cation transporting ATPase, C-terminus PF00690 [poplar] [flax] Cation_ATPase_N Cation transporter/ATPase, N-terminus PF12515 [poplar] [flax] CaATP_NAI Ca2+-ATPase N terminal autoinhibitory domain CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.007G055500.1 pacid=42765209 polypeptide=Potri.007G055500.1.p locus=Potri.007G055500 ID=Potri.007G055500.1.v4.1 annot-version=v4.1 ATGGAGAGGTTAGTGAGTGGGGATTTTGATGTGAAAGCGAAGCATTCATCAGAGGAAGCGTTGCAGAAATGGAGGAAGTTATGTGGGGTGGTGAAGAATC CTAAGAGAAGGTTTCGTTTCACTGCCAATCTTTCCAAGCGATATGAGGCTGCTGCTATGCGTAAAACCAATCAGGAGAAATTAAGGATTGCTGTTCTGGT TTCCAAAGCTGCGTTTCAGTTTATCCAAGGTGTCTCCCCAAGCGACTATAACGTACCTGCAGAAGTCAAGGCTGCAGGTTTTGACATATGTGCTGACGAG TTAGGATCAATTGTTGAAGGCCATGATGTCAAGAAGATCAAATTTCATGGTGGGGTAACTGGTGTTTCTGAAAAGCTCTGCACTTCAATCGTTGATGGGC TAACCACAACGGATAGTGATCTACTGAATCGTAGACAAGAGATTTATGGGATCAATAAGTTTGCCGAGAGCCAACCTCGGAGTTTCTGGATATTTGTTTG GGAAGCACTTCAAGATATGACTCTTATGATACTTGGAGTGTGTGCTTTTGTGTCTTTGATTGTTGGCATAGCAACAGAAGGATGGCTAGAGGGAACCCAT GATGGCCTTGGAATTGTTGCAAGTATCTTGTTAGTCGTGTTTGTGACAGCTATAAGTGATTACCGTCAATCGTTACAATTCAGGGACTTGGACACAGAGA AAAAGAAAATCATCATTCAGGTCACTAGAAATGGATTTAGGCAGAAATTGTCAATATATGATCTGCTTCCTGGTGATATAGTGCATCTTGCTATTGGAGA CCAAGTACCTGCTGATGGGCTTTTTGTTTCAGGATTTTCTGTGTTAATTGATGAGTCGAGTTTAACTGGTGAAAGTGAGCCAGTAATGGTAAATTCTGAA AATCCTTTTATGCTTTCTGGAACTAAGGTCCAAGATGGATCATGCAAGATGATGGTTGCCACTGTTGGGATGAGAACCCAGTGGGGTAAATTGATGGCGA CTCTAAGTGAAGGAGGCGATGATGAAACTCCACTGCAGGTAAAACTGAATGGAGTGGCAACCATTATTGGAAAGATTGGCCTTTTCTTTGCTGTAGTGAC TTTTGCAGTTCTGGTACAAGGGTTATTTAGCCACAAGTGGCAAGCAGGGACTTACTTTCGCTGGTCTGGAGATGATGCACTGGAGATATTGGAATACTTT GCCATTGCAGTTACAATTGTTGTTGTTGCAGTTCCCGAAGGGCTACCACTAGCTGTGACGTTGAGCCTTGCATTTGCCATGAAGAAGATGATGAATGATA AAGCACTTGTTCGACATCTGGCAGCTTGTGAGACTATGGGGTCCGCAACAACAATCTGCAGTGACAAAACTGGGACACTAACTACTAATCACATGACTGT TGTGAAGTCATGCATTTGCATGGAAGTCAAGGTAGTTGACCAACCTACTAAGGCTGCTAGCTTGGTCTCTGAAATGCCTGTTTCTGCTGTAAAACTTCTC CTGCAATCAATATTTAACAACACTGGAGGTGAGGTTGTTGTTAACAAAGATGGTAAACGTGAGATTTTAGGAACACCCACCGAGACTGCTTTATTGGAGT TTGCCTTATCCCTGGGTGGAGATTTCCAGGCAGAGCGACAAGCTGTGAAACTTGTTAAAGTTGAACCTTTCAACTCCACGAAGAAGCGAATGGGGGTAGT GATGGAACTTCATGAAGGTGGTTTGCGAGCCCACACCAAAGGTGCTTCAGAAATAGTTTTGGCTGCTTGTGACAAGGTGATCAATTCAAATGGTGACATT GTTCCCCTGGATGAAGAATCCACTAACCTCCTTAAGGATACAATCGATCAGTTTGCTAATGAGGCTCTTAGAACTCTCTGTATTGCCTATATGGAACTGG AAGGTGGGTTCTCCCCTGAGAATCCTATGCCAGTTTCTGGTTATACTTGTATAGGGATTGTGGGTATCAAAGATCCTGTTCGTCCAGGAGTCAAGGAGTC TGTTGCAGTATGTCGTTCAGCTGGTATCACTGTACGAATGGTTACAGGAGATAATATAAATACTGCAAAGGCTATTGCAAGGGAATGTGGGATTCTTACT GATGATGGTATAGCAATTGAGGGTCCAGATTTCCGAGAGAAGAGCCTGGAAGAATTGCTCCAACTAGTTCCCAAAATTCAGGTGATGGCTCGATCTTCAC CTCTTGACAAACATACACTGGTGAAACATTTGCGAACGACCTTTGGTGAGGTTGTTGCAGTGACTGGTGATGGAACAAACGATGCTCCAGCACTCCATGA AGCCGATATTGGTCTAGCAATGGGCATTGCTGGAACTGAGGTGGCTAAAGAGAGTGCTGATGTCATAATTCTGGATGACAATTTCTCAACCATCGTGACA GTAGCCAAATGGGGACGCTCAGTTTACATAAATATTCAAAAATTCGTACAGTTCCAGCTGACTGTTAACGTGGTGGCCTTAATTGTTAACTTCTCTTCAG CTTGTTTGACAGGTAGTGCTCCCCTCACAGCTGTCCAGCTTTTGTGGGTAAACATGATCATGGATACCCTGGGAGCACTTGCACTTGCAACTGAGCCTCC AAATGAAGAACTAATGAAGCGTTCCCCAGTTGGAAGGAAAGGGAACTTTATCAGCAGCGTCATGTGGAGGAATATCTTAGGCCAATCTCTTTACCAGTTT ATGGTAATATGGCACCTTCAAGCCAAAGGGAAAGCATTATTTAGTCTCGATGGCCCTGATTCTGATCTAGTCCTGAACACCCTTATATTCAATTCATTCG TCTTTTGTCAGATATTCAATGAGATAAGCTCCCGCGAGATGGAGGAGATTGATGTTTTCAAAGGCATATTGGATAACTATGTTTTTGTTGCTGTTATTGG TGGCACTGTCCTTTCCCAAATCATAATCGTGGAATTCCTGGGAGCATTTGCAAATACAACACCTCTCACTTTCGCACAGTGGTTCCTTAGTGTGCTCATT GGATTTCTTGGCATGCCGATTGCTGCTGGTTTAAAGAAGATCCCTGTATAG
AA sequence Show only first row Show all	>Potri.007G055500.1 pacid=42765209 polypeptide=Potri.007G055500.1.p locus=Potri.007G055500 ID=Potri.007G055500.1.v4.1 annot-version=v4.1 MERLVSGDFDVKAKHSSEEALQKWRKLCGVVKNPKRRFRFTANLSKRYEAAAMRKTNQEKLRIAVLVSKAAFQFIQGVSPSDYNVPAEVKAAGFDICADE LGSIVEGHDVKKIKFHGGVTGVSEKLCTSIVDGLTTTDSDLLNRRQEIYGINKFAESQPRSFWIFVWEALQDMTLMILGVCAFVSLIVGIATEGWLEGTH DGLGIVASILLVVFVTAISDYRQSLQFRDLDTEKKKIIIQVTRNGFRQKLSIYDLLPGDIVHLAIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVNSE NPFMLSGTKVQDGSCKMMVATVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVQGLFSHKWQAGTYFRWSGDDALEILEYF AIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKSCICMEVKVVDQPTKAASLVSEMPVSAVKLL LQSIFNNTGGEVVVNKDGKREILGTPTETALLEFALSLGGDFQAERQAVKLVKVEPFNSTKKRMGVVMELHEGGLRAHTKGASEIVLAACDKVINSNGDI VPLDEESTNLLKDTIDQFANEALRTLCIAYMELEGGFSPENPMPVSGYTCIGIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILT DDGIAIEGPDFREKSLEELLQLVPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVT VAKWGRSVYINIQKFVQFQLTVNVVALIVNFSSACLTGSAPLTAVQLLWVNMIMDTLGALALATEPPNEELMKRSPVGRKGNFISSVMWRNILGQSLYQF MVIWHLQAKGKALFSLDGPDSDLVLNTLIFNSFVFCQIFNEISSREMEEIDVFKGILDNYVFVAVIGGTVLSQIIIVEFLGAFANTTPLTFAQWFLSVLI GFLGMPIAAGLKKIPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37640		ACA2	calcium ATPase 2 (.1)		Potri.007G055500 [exp]	0	1	Pt-ACA2.1
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Potri.011G131100 [exp]	2.44	0.9604
AT4G39830			Cupredoxin superfamily protein...		Potri.007G088290 [exp]	3.16	0.9642
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Potri.005G068700 [exp]	4.00	0.9570
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014328 [exp]	5.47	0.9126
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Potri.005G224100 [exp]	6.00	0.9437
AT1G05340			unknown protein		Potri.006G021600 [exp]	8.94	0.9040
AT1G72450	ZIM	TIFY11B, JAZ6	TIFY DOMAIN PROTEIN 11B, jasmo...		Potri.003G068900 [exp]	9.74	0.9438
AT3G55430			O-Glycosyl hydrolases family 1...		Potri.008G055900 [exp]	9.79	0.9004
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Potri.003G159800 [exp]	9.94	0.9348
AT5G04760	MYB		Duplicated homeodomain-like su...		Potri.001G219100 [exp]	10.39	0.9368

Compare expression of checked genes

Potri.007G055500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.