Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28670 578 / 0 Protein kinase family protein with domain of unknown function (DUF26) (.1) AT1G70520 509 / 6e-174 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT5G40380 406 / 1e-133 CRK42 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) AT1G70530 397 / 3e-130 CRK3 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) AT1G19090 352 / 2e-113 CRK1, RKF2 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) AT4G23220 307 / 6e-95 CRK14 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) AT4G05200 298 / 7e-92 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23180 295 / 6e-91 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23280 293 / 2e-90 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G23160 305 / 3e-90 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G043800 [exp] 527 / 0 AT1G70520 805 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.010G043700 [exp] 521 / 1e-178 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.001G348000 [exp] 420 / 1e-138 AT5G40380 729 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.010G043900 [exp] 412 / 5e-136 AT1G70530 805 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Potri.012G087000 [exp] 411 / 4e-135 AT5G40380 567 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.017G141400 [exp] 383 / 2e-124 AT5G40380 390 / 6e-127 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.017G141300 [exp] 377 / 1e-121 AT5G40380 382 / 4e-123 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.001G276600 [exp] 367 / 2e-118 AT1G70520 373 / 8e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.004G025200 [exp] 325 / 5e-102 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029123 [exp] 507 / 9e-173 AT1G70520 822 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030589 [exp] 505 / 6e-172 AT1G70520 813 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030901 [exp] 497 / 2e-169 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10029122 [exp] 395 / 4e-129 AT1G70530 789 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10013040 [exp] 378 / 1e-122 AT1G70530 788 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10010960 [exp] 346 / 4e-111 AT1G70520 373 / 2e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10018382 [exp] 318 / 2e-99 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10018379 [exp] 310 / 2e-96 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007633 [exp] 303 / 1e-93 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10003711 [exp] 288 / 9e-92 AT1G70740 502 / 2e-178 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Potri.007G056000.2 pacid=42766146 polypeptide=Potri.007G056000.2.p locus=Potri.007G056000 ID=Potri.007G056000.2.v4.1 annot-version=v4.1 ATGTTTCTTTTCTTTTTCCAACTTTCTTCTCTAATGGCAACTTATTCTCTTCTGATCTCCCTAGTCATTTATGTCATGGCGTTTTCAATCAATCTGTCGC ATGCAGACCCGAGAACAGACCTTGTTTTGCGTACGTGTGGCAAAGTGCGCGTTCAAAATGTGTCAAACTACTTCAAGTACTATTCAAGCATCACAGATTA CATGCAAGATGAGATTTATCGCAACAAGTTTGCATTTAAGGATACAGGAGAGCCGCCAGATCGGTTGTATGTGCTTGCCCAATGCATGGATGATCTAACT AACGATGAATGTGCTATGTGTTTCTCGCAAATTAGTACTCTCATCCCCAGTTGCTTTCCTAGCACCGGTGGTCGCGTTTATTTTGATGGTTGCTTTATTA GGGCTGAGAATTATAGTTTCTATCGTGAAGCTCTTGCCCCTGAAGATACGAAGAGATGCAGTGGCATTGTAAACAAGGGGAAAGAATTTAGCGTTGCAGT AAAGGAAGTGCTGAGTAAGATGTTATTGAAGGCTCCGAGTTTCCGAGGCTTTGCTTCCAAGCATGAGACTTCAAATGGCATATCTGCCTATGGGATGGCT AACTGCTGGAAGATCTTGGACCATGATTTGTGTTCCATTTGCCTGTCAGAGGCGGTTGCATCTGCCTTATCATGCATTCCATCTACGGAGGCTCGTGTGC TTAATGCTGGCTGCTTTCTACGCTATTCTGATGCTTCATTTGCCAATGATTCTAATGGTGAATACTCCAAAGAAGAAGTATTTTCCTACATCACATACAT TATGGGTGTGGTTCTGATCTGTGTAATAGCAATAGGTATTGGTGTTTGTGTGGGTAAGCTTACCTATAGAAGAAAGATCCGTCTCAAGCAATCGAAAGAG ACGGAGGACTTGTTATTAGAGGAGAGGGTGCAGTACATGCAGTTCAAGTACGCGACACTTGACACGGCAACTGAAAGTTTCAGTGAAACTAATAGGTTAG GATGTGGAGGATTTGGTGAAGTATTTAAGGGAACCTTACCAGATGGTAGAGAAATTGCAATAAAGCGATTATATATTAGTAGGAAATTTCGAGTACAAGA GATTCGTAATGAAATGGAAATTATTGGTAGAGCACAACACAAGAACTTGGTTCGATTCCTCGGTTGCTGCTTCACCAGCATTGACAGCTTCCTTGTCTAT GAATACCTAGCAAACAGAAGCCTGGATCTCATTTTATTTGATCCGGCAAAGAAGAAAGAACTTGATTGGAAAAGGAGATTTCTAATTATCGAAGGAACAG CTGAAGGTTTGGAGTACCTCCACAAGTATTCTCAAGTGCGGATCATTCATAGAGACATCAAAGCAAGTAATGTCTTACTAGACTTGAGACATCGACCAAA AATCTCAGATTTCGGACTAGCAAGATTTTATTCCTGTGACCAATCCCTCGTCAACACTGCCATTGCTGGAACACTGGGGTACATGGCTCCAGAATACATT GCCAAGGGAAGGTTAACTGAGAAGGTGGATGTCTATAGCTTTGGAGTTCTCGTCATCGAAATGATTACTGGAGTACAAAACAACAAATATCAATCCGAGA AAACATATGAAACTCTAGTTACCTGTGCATGGAAGCATTTCCAATCAAACACGGTACAAGAGATCATTGATACAAGTATGACGATTGAAGATGCTGAAGA AATCGAAAGAGTTGTTCAGATTGGTCTATTATGTACTCAAGAGTCACCAAATTTGCGGCCAACGACGACAGAAGTAGTTCAAATGCTTAGGAAAAAGGAT GTTGAATTGAGTTCACCATCCAAGCCTCCTTTCACAGATGAACTTATGGAATTACATTATTTAGGCAGCTTGGACCAACAGCATCCTTCTACCTTTGGTT TGTGA
AA sequence Show only first row Show all	>Potri.007G056000.2 pacid=42766146 polypeptide=Potri.007G056000.2.p locus=Potri.007G056000 ID=Potri.007G056000.2.v4.1 annot-version=v4.1 MFLFFFQLSSLMATYSLLISLVIYVMAFSINLSHADPRTDLVLRTCGKVRVQNVSNYFKYYSSITDYMQDEIYRNKFAFKDTGEPPDRLYVLAQCMDDLT NDECAMCFSQISTLIPSCFPSTGGRVYFDGCFIRAENYSFYREALAPEDTKRCSGIVNKGKEFSVAVKEVLSKMLLKAPSFRGFASKHETSNGISAYGMA NCWKILDHDLCSICLSEAVASALSCIPSTEARVLNAGCFLRYSDASFANDSNGEYSKEEVFSYITYIMGVVLICVIAIGIGVCVGKLTYRRKIRLKQSKE TEDLLLEERVQYMQFKYATLDTATESFSETNRLGCGGFGEVFKGTLPDGREIAIKRLYISRKFRVQEIRNEMEIIGRAQHKNLVRFLGCCFTSIDSFLVY EYLANRSLDLILFDPAKKKELDWKRRFLIIEGTAEGLEYLHKYSQVRIIHRDIKASNVLLDLRHRPKISDFGLARFYSCDQSLVNTAIAGTLGYMAPEYI AKGRLTEKVDVYSFGVLVIEMITGVQNNKYQSEKTYETLVTCAWKHFQSNTVQEIIDTSMTIEDAEEIERVVQIGLLCTQESPNLRPTTTEVVQMLRKKD VELSSPSKPPFTDELMELHYLGSLDQQHPSTFGL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28670			Protein kinase family protein ...		Potri.007G056000 [exp]	0	1
					Potri.001G076350 [exp]	1.00	0.9638
AT2G26590		RPN13	regulatory particle non-ATPase...		Potri.003G027722 [exp]	4.00	0.9263
AT1G04770			Tetratricopeptide repeat (TPR)...		Potri.009G033201 [exp]	13.85	0.8935
					Potri.012G100300 [exp]	14.38	0.9299
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Potri.018G098600 [exp]	22.11	0.7911
AT5G34883			Protein of unknown function (D...		Potri.017G039175 [exp]	34.24	0.8288
					Potri.006G177125 [exp]	35.14	0.8105
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Potri.010G141400 [exp]	38.52	0.8284	Pt-BXL1.2
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.003G057250 [exp]	41.83	0.8293
					Potri.002G181501 [exp]	43.81	0.8169

Compare expression of checked genes

Potri.007G056000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.