Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39850 337 / 1e-119 Ribosomal protein S4 (.1) AT5G15200 330 / 5e-117 Ribosomal protein S4 (.1.2) AT5G15750 45 / 9e-06 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein (.1) ATCG00380 39 / 0.0007 ATCG00380.1, RPS4 chloroplast ribosomal protein S4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G094500 [exp] 357 / 1e-127 AT5G39850 336 / 3e-119 Ribosomal protein S4 (.1) Potri.018G062300 [exp] 356 / 4e-127 AT5G39850 332 / 1e-117 Ribosomal protein S4 (.1) Potri.016G076500 [exp] 355 / 7e-127 AT5G39850 350 / 1e-124 Ribosomal protein S4 (.1) Potri.016G076800 [exp] 355 / 7e-127 AT5G39850 350 / 1e-124 Ribosomal protein S4 (.1) Potri.006G209700 [exp] 347 / 2e-123 AT5G39850 325 / 6e-115 Ribosomal protein S4 (.1) Potri.006G209801 [exp] 196 / 3e-65 AT5G15200 200 / 7e-67 Ribosomal protein S4 (.1.2) Potri.006G209900 [exp] 142 / 2e-44 AT5G39850 130 / 3e-40 Ribosomal protein S4 (.1) Potri.017G101200 [exp] 50 / 7e-08 AT5G15750 291 / 6e-102 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein (.1) Potri.004G113600 [exp] 47 / 9e-07 AT5G15750 312 / 3e-110 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008624 [exp] 345 / 1e-122 AT5G15200 342 / 8e-122 Ribosomal protein S4 (.1.2) Lus10012839 [exp] 332 / 2e-117 AT5G15200 333 / 4e-118 Ribosomal protein S4 (.1.2) Lus10030487 [exp] 332 / 2e-117 AT5G15200 333 / 4e-118 Ribosomal protein S4 (.1.2) Lus10042193 [exp] 325 / 2e-108 AT5G39850 327 / 2e-108 Ribosomal protein S4 (.1) Lus10001767 [exp] 47 / 1e-06 AT5G15750 317 / 3e-112 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0492 [poplar] [flax] S4 PF00163 [poplar] [flax] Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain CL0492 [poplar] [flax] S4 PF01479 [poplar] [flax] S4 S4 domain
Representative CDS sequence Show only first row Show all	>Potri.007G056100.1 pacid=42765500 polypeptide=Potri.007G056100.1.p locus=Potri.007G056100 ID=Potri.007G056100.1.v4.1 annot-version=v4.1 ATGGTTCACGTCAGTTTTTACAGAAACTATGGGAAGACTTTCAAGAAGCCGAGGCGCCCATATGAGAAGGAACGGTTGGACGCAGAGCTGAAACTTGTTG GAGAGTATGGGCTCCGTGCTAAGAGGGAGCTATGGAGGGTTCAATATGCCCTGAGCCGCATTCGTAATGCTGCAAGAATGCTTCTCACCCTGGACGAGAA GAACCCACGCCGAATTTTTGAAGGTGAAGCCCTTCTCCGCAGGATGAACAGGTATGGTCTTCTAGAGGAGAACCAGAACAAGCTTGATTATGTCCTGGCC CTCACTGTTGAGAACTTCCTTGAGCGTCGGCTCCAGACCCTCGTGTTCAAGGCTGGCATGGCAAAGTCTATTCACCATGCTCGTGTGCTCATCAAGCAGA GGCACACTAGGGTTGGAAGGCAGGTTGTTAACATTCCATCTTTTATGGTGAGGGTTGACTCCCAGAAACACATTGATTTTTCTCTCACAAGTCCACTTGG AGGTGGCCGTCCTGGAAGAGTGAAGAGAAAGAATCAGAAGGCTGCTGCCAAGAAGGCTACTGGTGGAGATGGTGATGAAGAGGATGAGGAATGA
AA sequence Show only first row Show all	>Potri.007G056100.1 pacid=42765500 polypeptide=Potri.007G056100.1.p locus=Potri.007G056100 ID=Potri.007G056100.1.v4.1 annot-version=v4.1 MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRAKRELWRVQYALSRIRNAARMLLTLDEKNPRRIFEGEALLRRMNRYGLLEENQNKLDYVLA LTVENFLERRLQTLVFKAGMAKSIHHARVLIKQRHTRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNQKAAAKKATGGDGDEEDEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39850			Ribosomal protein S4 (.1)		Potri.007G056100 [exp]	0	1
AT4G25740			RNA binding Plectin/S10 domain...		Potri.005G040100 [exp]	2.64	0.9531
AT5G59850			Ribosomal protein S8 family pr...		Potri.003G114800 [exp]	7.34	0.9460	RPS15.1
AT1G73230			Nascent polypeptide-associated...		Potri.012G037900 [exp]	8.12	0.9368
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Potri.004G196500 [exp]	10.95	0.9353	Pt-RPL30.1
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Potri.003G161200 [exp]	11.66	0.9228
AT3G04400		EMB2171	embryo defective 2171, Ribosom...		Potri.008G171200 [exp]	13.26	0.9309	RPL23.4
AT3G56340			Ribosomal protein S26e family ...		Potri.019G057000 [exp]	13.85	0.9365	RPS26.2
AT3G60770			Ribosomal protein S13/S15 (.1)		Potri.014G068600 [exp]	14.49	0.9345	RPS13.1
AT4G29480			Mitochondrial ATP synthase sub...		Potri.006G232000 [exp]	15.58	0.9192
AT5G57290			60S acidic ribosomal protein f...		Potri.009G032600 [exp]	17.02	0.9280

Compare expression of checked genes

Potri.007G056100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.