Plant FIBer expression Database

Potri.007G056200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G38630 395 / 3e-136 ATMCB1, MBP1, AT-MCB1 ,RPN10 MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, regulatory particle non-ATPase 10 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G133000
[exp]
447 / 2e-156 AT4G38630 436 / 3e-152 MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, regulatory particle non-ATPase 10 (.1)
Potri.004G173700
[exp]
435 / 8e-152 AT4G38630 397 / 5e-137 MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, regulatory particle non-ATPase 10 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025050
[exp]
443 / 7e-154 AT4G38630 509 / 4e-180 MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, regulatory particle non-ATPase 10 (.1)
Lus10034493
[exp]
427 / 1e-148 AT4G38630 512 / 0.0 MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, regulatory particle non-ATPase 10 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0128 vWA-like PF13519 VWA_2 von Willebrand factor type A domain
Representative CDS sequence
>Potri.007G056200.1 pacid=42765489 polypeptide=Potri.007G056200.1.p locus=Potri.007G056200 ID=Potri.007G056200.1.v4.1 annot-version=v4.1
ATGGTTCTCGAGGCAACAATGATTTGTATCGATAATTCAGAGTGGATGCGAAATGGTGATTACTCTCCGTCAAGATTTCAAGCTCTATCAGATGCTGTTA
ATCTCATTTGTGGAGCTCAAACTCAGTCGAATCCAGAGAACACGGTTGGAATTCTTACAATGGCTGGAAAAGGGGTTCGTGTTTTGGTTACACCTACTAG
TGACCTTGGCAAGATCTTAGCTTGCATGCATGGTCTAGAAATAGGTGGTGAGGTGAACTTGGTTGCTGGTATACAGGTGGCTCAATTGGCTCTCAAGCAT
CGTCAAAATAAAAAGCAGCAACAAAGGATTATTGTCTTTGTTGGAAGTCCCATCAAACATGACAAGAAGGTATTGGAGATGATTGGAAGAAAGTTGAAAA
AGAATAATGTAGCACTTGATATTGTTGATTTCGGTGAAGAAGGTGATGGGAAGGCAGAGAAACTGGAAGCACTTCTTGCTGCTGTGAACAGTAATGACAC
CAGCCATATTGTTCATGTCCCCCCTGGTCCAAGTGCTCTTTCTGATGTGCTTATAAATACACCTATCTTCACTGGGGATGGGGAAGGTGGGAGTGGTTTT
GCTGCTGCAGCAGCAGCTGCTGCCGCTGATGGTGTCTCTGGTTTTGAGTTTGGGGTGGATCCCAATCTTGATCCTGAACTGGCGCTTGCTCTTAGAGTTT
CAATGGAAGAGGAGAGGGCCAGGCAAGAAGCAGCTGCTAAAACGGCAGCAGAGGAGGCTGCTAAACAAGAAAAAGCAAGGGAACAACCATCTAGCTCACA
GGATGCAACAATGACTGAAAATAACAGTGTCCCAGCTCCTGATGCTTACAATAAAAAAAATGAGTTAATGGATGAGGAGAATTCTCTGCTACAACAGGCT
CTTGCAATGTCGATGGATAGCCCTGGCTCTAGTCATGATGTGAGAGATATGGATATGTCTGAGGCAACCACAGATGACCCAAAGTTGGCACCAGCTCTTC
AATTACCTATGCAGGACAGTTCAAGGGATTCATCAAGCCAGATGGATATAAGTAAATTGTTGGCTAATCAATCTTTTGTGTCCTCCATCCTAGCATCACT
TCCAGGCGTTGATCCAAACAATCCTTCAGTTAAAGATTTGCTTGCTTCCATGCAAAGCCAATCCAAGCCCCAAGAGAAGAAGGATGAAGACAAACAGCCA
AAGGAGGAGAAGTGA
AA sequence
>Potri.007G056200.1 pacid=42765489 polypeptide=Potri.007G056200.1.p locus=Potri.007G056200 ID=Potri.007G056200.1.v4.1 annot-version=v4.1
MVLEATMICIDNSEWMRNGDYSPSRFQALSDAVNLICGAQTQSNPENTVGILTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEVNLVAGIQVAQLALKH
RQNKKQQQRIIVFVGSPIKHDKKVLEMIGRKLKKNNVALDIVDFGEEGDGKAEKLEALLAAVNSNDTSHIVHVPPGPSALSDVLINTPIFTGDGEGGSGF
AAAAAAAAADGVSGFEFGVDPNLDPELALALRVSMEEERARQEAAAKTAAEEAAKQEKAREQPSSSQDATMTENNSVPAPDAYNKKNELMDEENSLLQQA
LAMSMDSPGSSHDVRDMDMSEATTDDPKLAPALQLPMQDSSRDSSSQMDISKLLANQSFVSSILASLPGVDPNNPSVKDLLASMQSQSKPQEKKDEDKQP
KEEK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G38630 ATMCB1, MBP1, A... MULTIUBIQUITIN-CHAIN-BINDING P... Potri.007G056200
[exp]
0 1
AT5G51140 Pseudouridine synthase family ... Potri.015G101300
[exp]
3.00 0.8457
AT1G80360 Pyridoxal phosphate (PLP)-depe... Potri.001G177000
[exp]
3.46 0.8681
AT4G37210 Tetratricopeptide repeat (TPR)... Potri.005G130800
[exp]
6.78 0.8534
AT2G02370 SNARE associated Golgi protein... Potri.001G078700
[exp]
10.95 0.8442
AT4G27650 PEL1 PELOTA, Eukaryotic release fac... Potri.005G204500
[exp]
13.07 0.7803 PEL1.2
AT5G48220 Aldolase-type TIM barrel famil... Potri.014G169100
[exp]
16.97 0.8065
AT1G79590 ATSYP52, SYP52 syntaxin of plants 52 (.1.2) Potri.006G032800
[exp]
17.66 0.8306
AT4G26910 Dihydrolipoamide succinyltrans... Potri.014G154700
[exp]
17.97 0.8082
AT2G32950 FUS1, EMB168, D... FUSCA 1, EMBRYO DEFECTIVE 168,... Potri.014G159300
[exp]
18.02 0.7997 COP1.1
AT2G30942 Protein of unknown function (D... Potri.002G263100
[exp]
18.16 0.8012

Potri.007G056200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.