Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66150 1428 / 0 Glycosyl hydrolase family 38 protein (.1) AT3G26720 1257 / 0 Glycosyl hydrolase family 38 protein (.1.2) AT5G13980 1222 / 0 Glycosyl hydrolase family 38 protein (.1.2.3) AT5G14950 302 / 2e-86 GMII, ATGMII golgi alpha-mannosidase II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G106500 [exp] 1298 / 0 AT5G13980 1437 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.014G143600 [exp] 1256 / 0 AT5G13980 1535 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.002G238200 [exp] 1233 / 0 AT3G26720 1477 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Potri.001G350400 [exp] 308 / 3e-88 AT5G14950 1678 / 0.0 golgi alpha-mannosidase II (.1) Potri.017G073900 [exp] 301 / 5e-86 AT5G14950 1672 / 0.0 golgi alpha-mannosidase II (.1) Potri.008G117400 [exp] 81 / 4e-16 AT5G14950 470 / 1e-157 golgi alpha-mannosidase II (.1) Potri.012G106401 [exp] 64 / 1e-06 AT5G13980 71 / 1e-10 Glycosyl hydrolase family 38 protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025960 [exp] 1274 / 0 AT5G66150 1097 / 0.0 Glycosyl hydrolase family 38 protein (.1) Lus10012577 [exp] 1180 / 0 AT5G13980 1483 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10035111 [exp] 1177 / 0 AT5G13980 1467 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10012578 [exp] 1150 / 0 AT3G26720 1405 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Lus10014259 [exp] 1133 / 0 AT3G26720 959 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Lus10036074 [exp] 1055 / 0 AT5G13980 1372 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10041516 [exp] 1054 / 0 AT5G13980 1347 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10039457 [exp] 301 / 3e-86 AT5G14950 1573 / 0.0 golgi alpha-mannosidase II (.1) Lus10014507 [exp] 287 / 6e-81 AT5G14950 1552 / 0.0 golgi alpha-mannosidase II (.1) Lus10015337 [exp] 274 / 2e-76 AT5G14950 1506 / 0.0 golgi alpha-mannosidase II (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0158 [poplar] [flax] GH_CE PF01074 [poplar] [flax] Glyco_hydro_38N Glycosyl hydrolases family 38 N-terminal domain CL0103 [poplar] [flax] Gal_mutarotase PF07748 [poplar] [flax] Glyco_hydro_38C Glycosyl hydrolases family 38 C-terminal domain CL0599 [poplar] [flax] GH57_38_middle PF09261 [poplar] [flax] Alpha-mann_mid Alpha mannosidase middle domain
Representative CDS sequence Show only first row Show all	>Potri.007G056300.1 pacid=42765103 polypeptide=Potri.007G056300.1.p locus=Potri.007G056300 ID=Potri.007G056300.1.v4.1 annot-version=v4.1 ATGGAAAAGCTTGAGAGGGATTTGACATGGTTTGATGGGTGGGTTCTTATTGCTTTCGTGGTTGTTTTTGGCTTGCATGGTACAGTAGTTAATGGTGGTT ATGTGGATTACAATACTGGAGGTGGAGTTGTGCCAGGAAAGTTGAATGTCCATTTGGTACCACATTCACATGATGATGTTGGTTGGTTAAAGACTGTTGA TCAATACTATGTTGGATCAAATAACAGTATTCAGGGTGCTTGTGTTGAGAATGTGCTGGATTCAGTGGTGGAATCATTGCGTCGAGATTCCAATAGGAAG TTTGTTTTTGTTGAAATGGCTTTTTTCCAGCGATGGTGGGTAGAACAAAGTGAGGAAATTCAAGAGCAAGTGAGGAAACTTGTTGATGCTGGCCAATTGG AATTTGTAAATGGTGGTTGGTGTATGCATGATGAAGCAACTTGTCATTACATAGACATGATTGACCAAACAACTCTAGGTCACCGCGCAATAAAGGAGCA GTTTAACAAGACTCCTCGTGCTGGGTGGCAGATTGATCCATTTGGACATTCTGCAGTGCAAGCTTACCTTCTTGGGACTGAGCTTGGATTTGATTCTGTA CACTTTGCAAGGATTGATTACCAGGACAGAGCGAAGCGCAAAGATGATAAAGCTCTTGAAGTTATATGGCGTGGATCCAAGACATTTGGTTCTTCCTCTC AGATTTTTGCCAATGCCTTTCCTGTTCATTATAGTCCCCCAAATGGTTTTCATTTTGAAGTATTTGACGACTTTGTGCCAGTCCAGGACAACCCCCTTTT AGATGACTACAATGTTGAGCAGCGAGTTAATGATTTTATAAATGCTGCTATGACCCAAGCAAATGTGACAAGGACAAACCATATTATGTGGACCATGGGT GATGATTTCCAGTATCAATATGCTGAGTCTTGGTTCAAGCAGATGGACAAATTAATTCACTATGTTAACAAGGATGGTCGAGTGAATGCTTTGTATTCTA CACCATCTATCTACACTGATGTGAAAAATGCAGCAAATGAGTCTTGGCCACTGAAAACTGATGATTATTTCCCTTATGCAGATACGGAAAATGCCTACTG GACTGGCTTTTTTACTAGTCGCCCAGCCTTGAAGCGATATGTTCGTCAGCTGAGTGGATATTATTTGGCAGCACGACAACTGGAGTTCCTGGTTGGGAAA AAATCCACTGGTCCCAACACATATAGACTTGGAGATGCTTTAGGCATTGCACAGCACCATGATGGTGTCACTGGCACTGCCAAACAACACACTACAAATG ACTACGAAAAACGCCTTGCTATTGGAGCCTTGGAGGCAGAAGCTACTGTGAGTTCTGCTCTGTCATGCTTGGTTAGCAATAAATCAAGAGATCAATGTGC AAAACCAGCATTGAATTTTAGTCAGTGTCAATTACTAAATATCAGTTACTGCCCACCAACAGAGGAAGCTATTGCAAATGGGAAGAGATTGGTCATGGTT TTGTACAACGCTCTTGGATGGAATCGCACTGATGTTATTAGGATACCAGTTAATGACCCTAATCTAGTTGTTGCTGATTCCTATGGAAAACATATCGAGA CGCAATATGTTACCATGGATAATACCACAAGCAACTTAAGAAACTTTTATTTGAAGGCATATGGATTTCCATCCATTCAAGTGCCCCGGTATTGGCTGCA CTTTCAAGTGTCTGTGCCACCACTCGGTTGGAGTACCTACTTTATTGCTCGTGCTACTGGGATAGGGAAAAGAAGAAACGGGCTCTCTGTGATGGACAGC CCACAGAATGATACCATTGAAATCGGATCTGGAAATTTGAAAATGTCCTTTTCTTCGATGACTGGTCAACTCAAACGGATGTATAATTCCAAAACAGGGG TTGATGTGCCAATACAGCAAAGCTACTTTTGGTATGGTTCAAGCTCTGAGCTCATGCAATCTTCAGGTGCATATATCTTAAGGCCTGATGGTTCCCCTCC CCATGTTGTTGCAAGATCAGTGCCCCTGCAGGTTCATCGTGGACCACTGTTTGATGAGGTTCGCCAACAATTTAATTCATGGATCTACCAGGTAACAAGA GTTTACAAAGATCAAGAGCATGCAGAACTTGAATACACTATTGGCCCAATTCCCCTTGAAGACAGTGTTGGAAAAGAGGTCATCACAAGAATGACAGCAA ATATGGCCACAGAAAAGGTGTTTTATACTGATTCTAATGGAAGGGACTTTCTAAAGCGGATTCGAGACTACAGAGCTGACTGGAGCCTCTCAGTCAATGA ACCTGTTGCAGGAAACTATTATCCGCTTAACCTTGGAATTTTTACGATGGATAAGAGATCTGAATTATCAGTCTTGGTTGATCGTGCCACTGGAGGAGCC AGCATTGAAGATGGTCAACTAGAACTAATGCTTCATAGGCGGACTCTCCATGATGATTCCAGAGGAGTTAATGAAGCCCTTGATGAAAGTGTTTGCATTG GAGATGAATGTGAAGGACTAACGATCAGAGGAAATTATTATTTGAGCATCAACCAGGTAGGGGCTGGAGCAGTCTGGCGCCGAACAACTGGCCAAGAGAT TTACACACCACTTCTTGCAGCTTTCACACAGGAGAAGGAAGAGACTTCGAAAGCATCTCATGTGGCCACAGGAACTGCCATGGATCCCGGCTACAGCTTG CCACTAAATGTTGCTTTGATAACCCTTCAGGAGCTCGATGATGGGAGTGTTCTTCTCCGTCTGGCTCATTTATATGAGGCGGGAGAAGATGCTGCTTATT CAACACTAGCTACAGTTGAACTGAAGAAGATGTTCAGTGGAAAAGCAATTAAGGAGCTGAAGGAAATGAGCTTGTCATCAAACCAAGAGAAATCAGAGAT GAAGAAGATGACATGGAAGGTTGAGGGAGACAACGGAGAGCAACCTTCACCTGTTAGAGGTGGTCCTGTCGATAGTTCAACTCTCGTTGTTGAACTTGGT CCCATGGAAATTCGCACATTCTTGCTACAATTTTGA
AA sequence Show only first row Show all	>Potri.007G056300.1 pacid=42765103 polypeptide=Potri.007G056300.1.p locus=Potri.007G056300 ID=Potri.007G056300.1.v4.1 annot-version=v4.1 MEKLERDLTWFDGWVLIAFVVVFGLHGTVVNGGYVDYNTGGGVVPGKLNVHLVPHSHDDVGWLKTVDQYYVGSNNSIQGACVENVLDSVVESLRRDSNRK FVFVEMAFFQRWWVEQSEEIQEQVRKLVDAGQLEFVNGGWCMHDEATCHYIDMIDQTTLGHRAIKEQFNKTPRAGWQIDPFGHSAVQAYLLGTELGFDSV HFARIDYQDRAKRKDDKALEVIWRGSKTFGSSSQIFANAFPVHYSPPNGFHFEVFDDFVPVQDNPLLDDYNVEQRVNDFINAAMTQANVTRTNHIMWTMG DDFQYQYAESWFKQMDKLIHYVNKDGRVNALYSTPSIYTDVKNAANESWPLKTDDYFPYADTENAYWTGFFTSRPALKRYVRQLSGYYLAARQLEFLVGK KSTGPNTYRLGDALGIAQHHDGVTGTAKQHTTNDYEKRLAIGALEAEATVSSALSCLVSNKSRDQCAKPALNFSQCQLLNISYCPPTEEAIANGKRLVMV LYNALGWNRTDVIRIPVNDPNLVVADSYGKHIETQYVTMDNTTSNLRNFYLKAYGFPSIQVPRYWLHFQVSVPPLGWSTYFIARATGIGKRRNGLSVMDS PQNDTIEIGSGNLKMSFSSMTGQLKRMYNSKTGVDVPIQQSYFWYGSSSELMQSSGAYILRPDGSPPHVVARSVPLQVHRGPLFDEVRQQFNSWIYQVTR VYKDQEHAELEYTIGPIPLEDSVGKEVITRMTANMATEKVFYTDSNGRDFLKRIRDYRADWSLSVNEPVAGNYYPLNLGIFTMDKRSELSVLVDRATGGA SIEDGQLELMLHRRTLHDDSRGVNEALDESVCIGDECEGLTIRGNYYLSINQVGAGAVWRRTTGQEIYTPLLAAFTQEKEETSKASHVATGTAMDPGYSL PLNVALITLQELDDGSVLLRLAHLYEAGEDAAYSTLATVELKKMFSGKAIKELKEMSLSSNQEKSEMKKMTWKVEGDNGEQPSPVRGGPVDSSTLVVELG PMEIRTFLLQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66150			Glycosyl hydrolase family 38 p...		Potri.007G056300 [exp]	0	1
AT5G10790		UBP22	ubiquitin-specific protease 22...		Potri.018G017000 [exp]	20.00	0.7676
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Potri.008G010800 [exp]	21.28	0.7684
AT3G58480			calmodulin-binding family prot...		Potri.006G197500 [exp]	21.54	0.7799
AT4G22320			unknown protein		Potri.004G001500 [exp]	25.33	0.6024
AT4G23330			unknown protein		Potri.001G103800 [exp]	26.26	0.7530
AT1G60560			SWIM zinc finger family protei...		Potri.006G245800 [exp]	32.71	0.6698
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Potri.004G090500 [exp]	33.13	0.7627
AT1G06930			unknown protein		Potri.019G127400 [exp]	35.98	0.7657
					Potri.002G011750 [exp]	36.49	0.7522
AT3G24570			Peroxisomal membrane 22 kDa (M...		Potri.018G081600 [exp]	45.16	0.7390

Compare expression of checked genes

Potri.007G056300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.