Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATHK1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17820 1476 / 0 AHK1, ATHK1 histidine kinase 1 (.1) AT2G47430 143 / 4e-34 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT2G01830 117 / 2e-26 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT1G27320 113 / 4e-25 AHK3 histidine kinase 3 (.1) AT5G35750 100 / 4e-21 AHK2 histidine kinase 2 (.1) AT1G66340 88 / 2e-17 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G40940 77 / 5e-14 ERS1 ethylene response sensor 1 (.1) AT3G04580 74 / 5e-13 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT5G10720 71 / 5e-12 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT3G57040 54 / 2e-07 ATRR4, ARR9 RESPONSE REGULATOR 4, response regulator 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G111700 [exp] 2208 / 0 AT2G17820 1435 / 0.0 histidine kinase 1 (.1) Potri.008G191100 [exp] 150 / 2e-36 AT2G47430 746 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.014G121500 [exp] 148 / 1e-35 AT2G47430 753 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.013G009700 [exp] 125 / 1e-28 AT2G47430 572 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.001G057400 [exp] 121 / 2e-27 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.014G164700 [exp] 120 / 3e-27 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.008G137900 [exp] 119 / 9e-27 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.003G171000 [exp] 115 / 1e-25 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.010G102900 [exp] 112 / 9e-25 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041891 [exp] 1615 / 0 AT2G17820 1561 / 0.0 histidine kinase 1 (.1) Lus10028438 [exp] 1400 / 0 AT2G17820 1553 / 0.0 histidine kinase 1 (.1) Lus10003686 [exp] 120 / 3e-27 AT2G01830 1330 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10013250 [exp] 118 / 2e-26 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10037032 [exp] 116 / 4e-26 AT1G27320 1094 / 0.0 histidine kinase 3 (.1) Lus10015773 [exp] 114 / 2e-25 AT1G27320 1395 / 0.0 histidine kinase 3 (.1) Lus10030772 [exp] 114 / 3e-25 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10031985 [exp] 114 / 4e-25 AT5G63890 752 / 0.0 HISTIDINE BIOSYNTHESIS 8, histidinol dehydrogenase (.1.2) Lus10035114 [exp] 107 / 4e-25 AT2G47430 132 / 2e-34 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10028992 [exp] 112 / 1e-24 AT2G01830 1337 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain CL0025 [poplar] [flax] His_Kinase_A PF00512 [poplar] [flax] HisKA His Kinase A (phospho-acceptor) domain CL0025 [poplar] [flax] His_Kinase_A PF02518 [poplar] [flax] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Potri.007G056400.4 pacid=42765943 polypeptide=Potri.007G056400.4.p locus=Potri.007G056400 ID=Potri.007G056400.4.v4.1 annot-version=v4.1 ATGGCTGAGGAAGGACGTCATAGAAACCACTCATGTTCACCAACTGTAAGCACTGGCACACCAATAATGGCAACTCCTTTGAGAAAAGTGTGTAACAGAA TTCTCGGGTTTGCCACTTCTTGCAGAAAGAATACAGCTCCTTATGGTAGAAGAATTTTCCATAGAGAAGTTGAACAAGATGAGTTCCAGTATGGAAACAC TCACTGCCTCTCCTCTTACTACAGTGTTTTTGTAGTCCGCTTGGCTATAATGGCTATGTTAGCAATTTTGATTGGGCTGCTAACCATACTAACGTGGCAT TTCACTAGAAGCTATACAAAAAAGTCACTAGATACCTTGGCTTCTGGCCTTCGATATGAACTTCTACAGCGCCCCATATTAAGAATGTGGAACATTCTGA ATTCCACAGCTGAGATAACTGCAGCCCAGGTTAAGCTATCAGAGTATGTAATCGGAAGGTACAGCAAGACAACCATTCAAGCCGAACAAGTGGAGGTTCT TTATGAAGTGATGAGGCATGTAACGTGGGCACTGTTTTCGAGTCGTAAAGCTCTCAATGCAATTACCATAAATTATAGAAATGGTTTTGTGCAGGCTTTC CACAGGGATCATAGGAGTAACAACACGTTCTACATCTACTCTGATCTTAGGAACTACTCAATCAATGCCAAAGGGCCTTCTGATGCAAATATGTTCTTAT CGCATCAAGCATGGAATGATCAATCCATCCACAGTAACTTTTCTGCAATTTGGTATCGTGAACCACTTGATCCTACCTCAGGCGAAAAGATAGGAAAAGC AAGTCCAATTCCACCAGACGATCTTATCAATATTGCAGGCCTTTCACAAGTACCTGACGGTGTGGCTTCATGGCATGTGGCAGTAAGCAAGTACACGGAT TCACCACTGCTTTCAGCAGCATTGCCTGTGTGGGATGCTTACAATAAAAGCATTGTGGCCGTCGTAGGTGTTACTACTGCTCTCTACAGTGTAGGCCAAT TGATGAGAGAGCTTGTTGAAGTCCATAAGGGATACATATATTTGACCTCTCAAGAGGGTTACTTATTGGCTACTTCCACGAATGCTCCTCTCTTGACAAA TTCAACAAGGCCCAATCTTATAATGGCTGTCGATACTGAGGAACCCACTATAAGAATGGGAGCTCGATGGTTGGAGAGAGTCTATGGAAACAAGTTTCCT CCAGGTCACGTTGTTCATGTGGAAAATGCAAAACTTGGCAAGCAGCAATGTTACATCGACTCGTTTTTTCTAAATCTGAAGAGACTCCCTATAGTGGGGG TGATCATCATTCCAAGAAGATATATAATGGGAAAGGTTGATGAGAGAGCATTCAAAACGTTGGTTATACTCATTTCTGCATCTCTATGTATCCTAGTCAT CGGATGTGTCTTCATTTTGATTCTCACAAATGGAGTATCAAAGGAGATGAAACTAAGGGCAGAACTGATAAGCCATCTTGATGCAAGGAGAAGGGCAGAG GCATCAAACAACTACAAAAGCCAGTTTCTGGCAAACATGAGTCACGAATTGAGGACTCCTATGGCTGCAGTGATTGGGCTGCTGGACATTCTTATCTGTG ATGATTGCCTCACGAATGAACAATATGCAAATGTTACACAGATCAGAAAGTGCTCCACGGCTCTACTCCGGCTTCTTAACAACATATTGGATCTGAGCAA GGTTGAATCTGGAAAATTGGTTTTGGAAGATGCTGAGTTTGACTTGGGAAGAGAACTTGAAGGACTTATTGACATGTTCTCTGTTCAGTGCATTAACCAC AATGTCGAGGCTGTTTTGGATCTCTCTGATGAGATGCCGAAATTAGTACGAGGAGACTCCGCCAGAGTTGTTCAAATATTTGCAAATCTGATAAGCAATT CTATAAAGTTTACGACAACGGGTCACATTATTCTGCGTGGTTGGTGTGAGAACTTAAATAATACTTACAATGACACACAGTTTCATCTCGATCAGAAGAA AATGCGTTGTGCAATTAAGCCAAAACTTAGGCAGCATGGGAATCATCTGAAGAAGGCCTGTAAGAAGGAAAACAAAATGATTCTTTGGTTTGAAATTGAT GACACAGGCTGTGGAATTGATCCAAGCAAATGGGAGTCTGTATTCGAAAGCTTTGAACAAGCTGATCCATCAACAACTCGACTGCATGGAGGCACTGGTC TTGGACTATGCATAGTTAGAACTTTGGTTAACAAGATGGGTGGAGAAATAAAGGTTGTGAAGAAGAATGGACCTGGAACTCTAATGCGACTATACTTGCT TCTCAAGACACCTACAGACGGTGCAGACCTACACTGCCAAGTAGATTTTTCAAGTCACAATGCCGTGGTGCTGGTGGCACTAAATGGCAGCATGGGCAGA GTTATTATGTCCCAGTGGTTGCGTGAAATCGGATTGACCACCTTAGGAGTGTCTGAGTGGAATGAACTGACACGAGTTCTTCGGAAACTCTTTCATGCCA GAAGACGTGAGAATGGCTTTGATGTTCAGTGTTCTATGAATGAACCATTAAAATCTGAAGTGCTTAATATTGAAGACATGAAGGACCTATTCATCATAGT TGTTGACGTTGGATTACTTGACTTGAGCACAGATATATGGAAGGAACAAATTAACTTCCTTGATAATTTCTCTGGAAAAGCCAAATTTGCATGGATGCTC AATCATGATACTTCAAATGCAATAAAGATGGAGCTTCGCAAGAAGGGGCATTTGCTGATGGTTAATAAACCACTTTACAAGGCCAAAATGATTCACATTT TGGAAACTGTCATAAAGGAGAAAGATCTTGAGTATCAAAAGAAAAGTTCGAATGCTGCAAGAGCTATGGCAAAGGACGGTGACATGCATGAATGCCTTGA GATTGATTCCACCCATTTTGACACTACCAGCTCTGAAGAATCAGATACAGCTGAAATGGGTGATTCCAATTCTCCAAGCACATTTCATCTCAGAGATGTA CGAAAAGAAAGAGAAGAGATCGCATGTCAATCACAGTGTCAAACATTTAAGTGCTTAATTGAATTGGCTGATGTTGATGCAGAAGCAAGAGAAGATCCAG GTCAAAATAGGCCCAATTTACAAGGCACCCAATATGGAAATGATATGCTACTCTGCAACAAGCAAGTGCCCTTTTCAACAGCAACTCGAAATGAAAGTTC TAAACACGATGAACGAAACTCAGAAACCAGTAGTCATAAAGAACAAGGCAATTCATATTCAAACAAAGCTGGGAATCAACAAAAGGCTCTTGATGGCTTA CGGATTCTGCTTGCGGAAGATACTCCTGTTCTTCAGAGAGTTGCAACCATCATGCTCGAAAAAATGGGGGCTAAAGTTATTACTGTCGGAGATGGACTAC AAGCAGTAGAAGCTCTAAATTGCAGTTTGAGTGAAAAAGATTGTAGAAGGGAATCCCCTGGAAATGATGGAAATACAGGTTTACAAACTGATATTCAGGA ATCCCAATCATATGACTTGATCCTAATGGACTGTCAGATGCCAAAGATGGATGGTTATGAAGCAACAAAAGCAATCAGGAAATCAGAAACTGGAACTGAC TTGCACATTCCTATTGTTGCATTGACAGCTCACGCTATGTCGTCAGATGAAGCCAAATGCTTGGAGGTTGGCATGGATGCTTATCTAACAAAGCCAATTG ACTACAAGTTGATGGTTTCCACCATTCTATCACTCACCAGAAGAAAAGCCTAA
AA sequence Show only first row Show all	>Potri.007G056400.4 pacid=42765943 polypeptide=Potri.007G056400.4.p locus=Potri.007G056400 ID=Potri.007G056400.4.v4.1 annot-version=v4.1 MAEEGRHRNHSCSPTVSTGTPIMATPLRKVCNRILGFATSCRKNTAPYGRRIFHREVEQDEFQYGNTHCLSSYYSVFVVRLAIMAMLAILIGLLTILTWH FTRSYTKKSLDTLASGLRYELLQRPILRMWNILNSTAEITAAQVKLSEYVIGRYSKTTIQAEQVEVLYEVMRHVTWALFSSRKALNAITINYRNGFVQAF HRDHRSNNTFYIYSDLRNYSINAKGPSDANMFLSHQAWNDQSIHSNFSAIWYREPLDPTSGEKIGKASPIPPDDLINIAGLSQVPDGVASWHVAVSKYTD SPLLSAALPVWDAYNKSIVAVVGVTTALYSVGQLMRELVEVHKGYIYLTSQEGYLLATSTNAPLLTNSTRPNLIMAVDTEEPTIRMGARWLERVYGNKFP PGHVVHVENAKLGKQQCYIDSFFLNLKRLPIVGVIIIPRRYIMGKVDERAFKTLVILISASLCILVIGCVFILILTNGVSKEMKLRAELISHLDARRRAE ASNNYKSQFLANMSHELRTPMAAVIGLLDILICDDCLTNEQYANVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLIDMFSVQCINH NVEAVLDLSDEMPKLVRGDSARVVQIFANLISNSIKFTTTGHIILRGWCENLNNTYNDTQFHLDQKKMRCAIKPKLRQHGNHLKKACKKENKMILWFEID DTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRLYLLLKTPTDGADLHCQVDFSSHNAVVLVALNGSMGR VIMSQWLREIGLTTLGVSEWNELTRVLRKLFHARRRENGFDVQCSMNEPLKSEVLNIEDMKDLFIIVVDVGLLDLSTDIWKEQINFLDNFSGKAKFAWML NHDTSNAIKMELRKKGHLLMVNKPLYKAKMIHILETVIKEKDLEYQKKSSNAARAMAKDGDMHECLEIDSTHFDTTSSEESDTAEMGDSNSPSTFHLRDV RKEREEIACQSQCQTFKCLIELADVDAEAREDPGQNRPNLQGTQYGNDMLLCNKQVPFSTATRNESSKHDERNSETSSHKEQGNSYSNKAGNQQKALDGL RILLAEDTPVLQRVATIMLEKMGAKVITVGDGLQAVEALNCSLSEKDCRRESPGNDGNTGLQTDIQESQSYDLILMDCQMPKMDGYEATKAIRKSETGTD LHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTRRKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.007G056400 [exp]	0	1	Pt-ATHK1.2
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.005G111700 [exp]	2.23	0.8508	ATHK1.3
AT4G27220			NB-ARC domain-containing disea...		Potri.001G404800 [exp]	2.44	0.8125
AT5G14940			Major facilitator superfamily ...		Potri.017G152800 [exp]	3.00	0.8398
AT1G76520			Auxin efflux carrier family pr...		Potri.011G145700 [exp]	3.46	0.8203
AT3G57200			unknown protein		Potri.006G045500 [exp]	5.65	0.8399
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Potri.012G088900 [exp]	7.14	0.7945
AT1G33440			Major facilitator superfamily ...		Potri.019G067500 [exp]	7.48	0.8015
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Potri.005G208500 [exp]	7.74	0.8148
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Potri.016G134600 [exp]	7.74	0.8033
AT1G77460			Armadillo/beta-catenin-like re...		Potri.005G180100 [exp]	8.00	0.7668

Compare expression of checked genes

Potri.007G056400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.