Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51280 602 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48850 285 / 6e-93 ATSDI1 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G04770 281 / 9e-92 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G20900 269 / 5e-85 TDM1, MS5 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G44330 233 / 5e-71 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G22794 87 / 3e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G112100 [exp] 880 / 0 AT3G51280 595 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G177600 [exp] 308 / 3e-102 AT1G04770 384 / 8e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G465401 [exp] 310 / 9e-98 AT4G20900 337 / 1e-108 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G163500 [exp] 303 / 1e-95 AT4G20900 328 / 1e-105 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G050600 [exp] 291 / 1e-95 AT1G04770 381 / 6e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G240700 [exp] 288 / 3e-94 AT5G48850 404 / 9e-143 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G033201 [exp] 54 / 5e-09 AT1G04770 53 / 2e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041886 [exp] 660 / 0 AT3G51280 566 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041887 [exp] 652 / 0 AT3G51280 572 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028433 [exp] 651 / 0 AT3G51280 569 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028434 [exp] 624 / 0 AT3G51280 560 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011872 [exp] 290 / 4e-95 AT5G48850 392 / 2e-138 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000753 [exp] 280 / 5e-91 AT1G04770 391 / 2e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023256 [exp] 286 / 1e-90 AT4G20900 330 / 4e-108 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011738 [exp] 277 / 6e-90 AT1G04770 389 / 1e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022806 [exp] 288 / 1e-88 AT5G05740 644 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3) Lus10008852 [exp] 278 / 2e-87 AT4G20900 311 / 7e-101 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.007G056500.1 pacid=42764909 polypeptide=Potri.007G056500.1.p locus=Potri.007G056500 ID=Potri.007G056500.1.v4.1 annot-version=v4.1 ATGATGCAAGAAATGTGGAATGCACCACCTGGTTTTAGACCAACAAAATCTGCACCAACTTCACCAGCAAAGCCGCTTGGTGTTTCAAGAACTCGCTCTG AGTCATTTCATGCTCTCCACAAAGTCCCTGTTGGTGACTCTCCTTATGTTAGAGCCAAAAATGTTCAGTTGGTTGATAAAGATCCAGAGAAGGCTATACC TCTATTTTGGGCGGCAATAAATGCTGGGGATAGAGTGGATAGTGCATTGAAAGATATGGCTATTGTTATGAAGCAACAGAATAGGGCTGATGAAGCAATT GAGGCTATCAAATCTTTACGACATCGGTGTTCAGATCAAGCCCAAGAGTCTCTCGATAACATTCTTCTTGATCTTTACAAGAGATGTGGAAGATTGGATG ACCAAATAGCATTGTTGAAGCACAAGCTATACATGATTCAACAAGGGTTAGCTTTCAATGGAAAAAGAACAAAGACTGCAAGGTCTCAAGGGAAGAAATT TCAGGTTTCTGTAGAACAAGAAGCAACTAGGTTATTGGGGAACTTGGGATGGGCATTGATGCAACAAAACAATTACATTGAAGCAGAAGATGCCTATAGA AGGGCACTTGCTATTGCACCTGACAACAACAAGATGTGCAATCTTGGGATTTGTTTGATGAAACAGGGGAGAATTAGTGAGGCTAAAGAGACATTGCGCA GAGTAAAACCAGCAGTGGCTGATGGCCCACGAGGTGTAGATTCACATCTCAAAGCCTATGAAAGGGCACAGCAGATGCTCAATGACCTTGAATCTGAGAT GATGAACATAGGAGGCGATCGGGTTGAACAAAGTAGGCTCTTTGATGCATTTCTTGGTTCTTCATCAATTTGGCAGCCTCAGCCTTGTAAGGATCATCAT AGTGTCTTGCCAACAACCAATGCAAAATCTTCTCATGATGATTTCTCCGATGAGAATGTCGATTCCAATATAGTAGCAAATTGTGCCCAGATGGTGCTTC GCCAACAGAAAACTATCAAACAGCTCACTACTCCTCCTTTAGGGAATTTATGGAATGTTGATGCACCTCCATTCTATTCCTCCAAATTGGTAAAGGAGCC AATTAAGGAACCAATTGGGTATCAATTCCATGATAAACTTAAGAGGACAAGGTCAGGAAATGTTGCTAGTTCAAACAGAAAGATTGAAATGGGGTTGTTC ACGGCACCATCTGTGGAACCAGAAAACCCAGAAACAAAGACGAGGAGACTATCAGATGAAACAGAAGACAAGGTGTCACAGTTGTTGCCAGATAATGATG ACTTTGAAGAAGCCATCCTTGCAGCCGTTCTAGGTCCTGCAAGAAATGCAGGGAAAACAGCAGGGAAGGTAGTTGAAACTGCGAATTCTGGGACCTTTCA GCAGAAGAAGATGGAAAAGCGACTCAAGGTTTTCCAGGACATCACCCTCTCTCTCAGCCCAAGAGCCTGA
AA sequence Show only first row Show all	>Potri.007G056500.1 pacid=42764909 polypeptide=Potri.007G056500.1.p locus=Potri.007G056500 ID=Potri.007G056500.1.v4.1 annot-version=v4.1 MMQEMWNAPPGFRPTKSAPTSPAKPLGVSRTRSESFHALHKVPVGDSPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRADEAI EAIKSLRHRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYMIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYR RALAIAPDNNKMCNLGICLMKQGRISEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLNDLESEMMNIGGDRVEQSRLFDAFLGSSSIWQPQPCKDHH SVLPTTNAKSSHDDFSDENVDSNIVANCAQMVLRQQKTIKQLTTPPLGNLWNVDAPPFYSSKLVKEPIKEPIGYQFHDKLKRTRSGNVASSNRKIEMGLF TAPSVEPENPETKTRRLSDETEDKVSQLLPDNDDFEEAILAAVLGPARNAGKTAGKVVETANSGTFQQKKMEKRLKVFQDITLSLSPRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51280			Tetratricopeptide repeat (TPR)...		Potri.007G056500 [exp]	0	1
AT5G66230			Chalcone-flavanone isomerase f...		Potri.005G114100 [exp]	2.23	0.9706
AT1G04030			unknown protein		Potri.013G047700 [exp]	3.74	0.9286
					Potri.018G114600 [exp]	5.29	0.9585
AT2G17620		CYCB2;1	Cyclin B2;1 (.1)		Potri.005G100000 [exp]	7.41	0.9550	Pt-CYCMS1.1
AT3G27330			zinc finger (C3HC4-type RING f...		Potri.001G336832 [exp]	8.83	0.9515
AT3G51280			Tetratricopeptide repeat (TPR)...		Potri.005G112100 [exp]	9.27	0.8954
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Potri.016G033000 [exp]	9.79	0.9579
AT3G51740		IMK2	inflorescence meristem recepto...		Potri.010G183400 [exp]	11.04	0.8521	RHG1.5
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Potri.005G181400 [exp]	13.41	0.9257
AT3G03620			MATE efflux family protein (.1...		Potri.015G139500 [exp]	14.28	0.8614

Compare expression of checked genes

Potri.007G056500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.