Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51290 546 / 0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT1G02110 272 / 1e-81 Protein of unknown function (DUF630 and DUF632) (.1) AT3G60320 253 / 9e-74 Protein of unknown function (DUF630 and DUF632) (.1) AT2G34670 195 / 1e-53 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT5G25590 165 / 7e-43 Protein of unknown function (DUF630 and DUF632) (.1) AT1G52320 152 / 7e-40 unknown protein AT1G21740 136 / 4e-33 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 131 / 1e-31 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 126 / 6e-30 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT2G17110 125 / 6e-30 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G112300 [exp] 717 / 0 AT3G51290 576 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.014G047400 [exp] 284 / 2e-85 AT3G60320 862 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G137600 [exp] 273 / 1e-81 AT3G60320 699 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.003G054800 [exp] 170 / 6e-45 AT1G52320 626 / 0.0 unknown protein Potri.006G244100 [exp] 168 / 7e-44 AT5G25590 603 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.001G181100 [exp] 165 / 6e-43 AT1G52320 615 / 0.0 unknown protein Potri.009G137500 [exp] 163 / 3e-42 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.018G036400 [exp] 158 / 1e-40 AT5G25590 656 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G108400 [exp] 153 / 5e-39 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028431 [exp] 585 / 0 AT3G51290 728 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10041884 [exp] 561 / 0 AT3G51290 649 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10042910 [exp] 239 / 2e-70 AT3G60320 727 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10036155 [exp] 218 / 1e-61 AT2G34670 516 / 3e-175 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10028207 [exp] 189 / 4e-53 AT3G60320 570 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025777 [exp] 169 / 2e-44 AT1G52320 652 / 0.0 unknown protein Lus10035887 [exp] 163 / 3e-42 AT1G52320 747 / 0.0 unknown protein Lus10022116 [exp] 162 / 5e-42 AT5G25590 753 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10038627 [exp] 152 / 5e-40 AT5G25590 538 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10037901 [exp] 146 / 8e-38 AT5G25590 627 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [poplar] [flax] DUF632 Protein of unknown function (DUF632) PF04783 [poplar] [flax] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Potri.007G056700.2 pacid=42765448 polypeptide=Potri.007G056700.2.p locus=Potri.007G056700 ID=Potri.007G056700.2.v4.1 annot-version=v4.1 ATGGGTTGTTGTTACTCAAGAATAGAGAGAGAGGAGATGGTGTCAAGATGCAAAGCAAGGAAGAGATACATGAAACAACTTGTCAAAGCAAGACAATCTC TTTCTGCTTCACATGCAATGTACATCCGTTCACTTCGCAGTACTGGATCAGCCCTTCTTCAGTTCTCCAACACTGAAACCGACCTCCACCTCCACCACCA CCACCATCACCGCCGCCTCCCACCCATCCATCCCTCCCCGCCACCACTACCACCCACCCCACTACCACCTCCCCCACCTCCCATGAGCCCAAGCTCAGAC ACATGGACAACCACAACCACCGCAACCGCTGCCTCCCCGCTTCCGCCCCCTCCTCCACCGCCTCCACCAGTGGCGGCGTCGAGTTGGGATTTCTGGGACC CCTTTGTCCCTCCTCCGCCGAGGTCAATGGAGGAGGAGGAGGAGGAGTGGGAGGAGGTGACCACCACCACCACTGCATCGGAGATGGTAGCGGTGGTCCC ACCTTCGGTGGTTAGTGGGTTTTCGAAAGAGACTGCTAGTGGAAGTGGGAGTGAGCTTGCTATGGTGGTTTCAAGAAATAGTAAAGATTTGGTGGAGATC ATTAAAGAAGTCGATGAATATTTTCTTAAAGCTGCTGATGCTGGTGGTCAACTTTCTTGTGTTTTGGAAGTTTCAAGCCCTAACTTGTCAGCAAGTCAAA GCAAAGGAGGTAAAGGTTATAATTATGGATGCCGTTTGACCAGTCCATCATTGTGGACATGGGGTTCAAGTCCAAAGCTTAATGGGTTTGGAAAGATTAG TGAGGAAATGGTTGTTAGTCATGGAGGAAGCGGGGGCGCAGCTCATGTTAGTCATTGTTCAACGGTGGAGAGACTATATGCCTGGGAGAAGAAGCTCTTC CTGGAGGTCAAGAATGCTGAGAGTTTGAAAATTGAGCATGAGAAGAAGTTGGCATTGCTGAGGAAGCTAGAGGTGAAGAGGGTTGAGTATGTAAAGACCG AGAAGACCAAGAAAGAAGTAGAGAAGTTGCAGTCCCAAATGATGGTCGCCACTCAGGGCATCGAGTCCATATCCACGGAAATCATCAAATTAAGGGAGAC AGAGCTTTACCCTCAACTCCTTGAGCTTGTAAAAGGGTCAATGTGCATGTGGAGAAGCATGTACGAGTTGCACCAGGTCCAGACACACATTGTTCAGCAG CTCAAATATCTCAACACAATCCCATCTACTGAGCCGACATCTGAGATTCATAGGCAGTCGACTCTCCAGCTTGAGCTTGAGGTCCACCAATGGCACCAAT CATTCTGCAATGTAGTCAAGGCTCAGCGGGATTACATTCAGTCCCTCACAGGCTGGCTGCGACTTAGCCTTTTCCAGTTCAGCAAAAACCCAATTTCAAG AACCAGTCAGGAATCAAGAATTTATTCCCTTTGTGAAGAATGGCACCATGCAGTTGATCGGATTCCTGACAAAGTGGCTTCTGAAGGAATCAAGAGCTTC TTAGCAGTAATTCATGCTATTGTAGTTCAACAAGCAGAAGAGCATAAGCAAAAGAAGAAGTCAGAATCTGCATTCAAGGAGTTTGAGAAGAAGGCTGCTG AGCTTAGATCCTTGGAGAGCAAGTATGGTCCATACTCGATGCCTGAAACTCCTAGCACTACAAGGAAAAAAGACCCAGTTATGGAGAAAAGAGCAAAGGC TGAGATCTCGCGGGCAAAGGCAGAGGAAGAAAAGAGTAAGCATGAAAAGTCAATTAGCGTAACCAGGTCAATGACAATGAACAATCTCCAGATGGGATTC CCACATGTTTTTCAGGCAATGGTAGGATTTTCGAGTGTGTGTATGAATGCTTTTGAATCGCTATACAACCAAGCCAAGAATGGTGACCAAGAGCATGATG TGAAGCGGCTATTACCCTGA
AA sequence Show only first row Show all	>Potri.007G056700.2 pacid=42765448 polypeptide=Potri.007G056700.2.p locus=Potri.007G056700 ID=Potri.007G056700.2.v4.1 annot-version=v4.1 MGCCYSRIEREEMVSRCKARKRYMKQLVKARQSLSASHAMYIRSLRSTGSALLQFSNTETDLHLHHHHHHRRLPPIHPSPPPLPPTPLPPPPPPMSPSSD TWTTTTTATAASPLPPPPPPPPPVAASSWDFWDPFVPPPPRSMEEEEEEWEEVTTTTTASEMVAVVPPSVVSGFSKETASGSGSELAMVVSRNSKDLVEI IKEVDEYFLKAADAGGQLSCVLEVSSPNLSASQSKGGKGYNYGCRLTSPSLWTWGSSPKLNGFGKISEEMVVSHGGSGGAAHVSHCSTVERLYAWEKKLF LEVKNAESLKIEHEKKLALLRKLEVKRVEYVKTEKTKKEVEKLQSQMMVATQGIESISTEIIKLRETELYPQLLELVKGSMCMWRSMYELHQVQTHIVQQ LKYLNTIPSTEPTSEIHRQSTLQLELEVHQWHQSFCNVVKAQRDYIQSLTGWLRLSLFQFSKNPISRTSQESRIYSLCEEWHHAVDRIPDKVASEGIKSF LAVIHAIVVQQAEEHKQKKKSESAFKEFEKKAAELRSLESKYGPYSMPETPSTTRKKDPVMEKRAKAEISRAKAEEEKSKHEKSISVTRSMTMNNLQMGF PHVFQAMVGFSSVCMNAFESLYNQAKNGDQEHDVKRLLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51290			Protein of unknown function (D...		Potri.007G056700 [exp]	0	1
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.001G468800 [exp]	9.38	0.9143
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Potri.009G089500 [exp]	9.79	0.8990
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Potri.001G131800 [exp]	10.77	0.8984
AT4G32490		AtENODL4	early nodulin-like protein 4 (...		Potri.017G011200 [exp]	12.32	0.8627
AT3G19540			Protein of unknown function (D...		Potri.001G297500 [exp]	15.16	0.8433
AT1G03670			ankyrin repeat family protein ...		Potri.013G134466 [exp]	16.15	0.8987
AT3G19550			unknown protein		Potri.009G091100 [exp]	20.97	0.8276
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Potri.012G115500 [exp]	21.90	0.8368
AT1G67720			Leucine-rich repeat protein ki...		Potri.010G052800 [exp]	29.39	0.8715
AT1G65810			P-loop containing nucleoside t...		Potri.004G077500 [exp]	30.39	0.8697

Compare expression of checked genes

Potri.007G056700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.