Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66180 501 / 3e-178 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT2G22400 56 / 2e-08 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G40000 56 / 3e-08 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G06560 51 / 1e-06 NOL1/NOP2/sun family protein (.1) AT5G55920 50 / 2e-06 OLI2 OLIGOCELLULA 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G26600 49 / 5e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G13180 49 / 6e-06 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) AT5G26180 48 / 8e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G23360 41 / 0.0007 MENG S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G096100 [exp] 57 / 1e-08 AT2G22400 1012 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G224000 [exp] 52 / 7e-07 AT5G26180 585 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G369600 [exp] 50 / 3e-06 AT4G26600 696 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G368500 [exp] 48 / 1e-05 AT3G13180 770 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Potri.005G204900 [exp] 46 / 4e-05 AT1G06560 758 / 0.0 NOL1/NOP2/sun family protein (.1) Potri.008G188600 [exp] 41 / 0.0007 AT1G23360 354 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028444 [exp] 546 / 0 AT5G66180 534 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10041897 [exp] 464 / 2e-154 AT4G10770 1097 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10007337 [exp] 66 / 1e-11 AT1G06560 725 / 0.0 NOL1/NOP2/sun family protein (.1) Lus10020761 [exp] 62 / 3e-10 AT1G06560 714 / 0.0 NOL1/NOP2/sun family protein (.1) Lus10020217 [exp] 57 / 1e-08 AT2G22400 975 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10032368 [exp] 51 / 9e-07 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10026452 [exp] 51 / 1e-06 AT5G26180 567 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10023095 [exp] 50 / 2e-06 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10025004 [exp] 48 / 9e-06 AT5G26180 566 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10016622 [exp] 45 / 0.0001 AT3G13180 759 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01189 [poplar] [flax] Methyltr_RsmB-F 16S rRNA methyltransferase RsmB/F
Representative CDS sequence Show only first row Show all	>Potri.007G056800.9 pacid=42766170 polypeptide=Potri.007G056800.9.p locus=Potri.007G056800 ID=Potri.007G056800.9.v4.1 annot-version=v4.1 ATGGAAGAAGAAACATCAAAGCTACCGTTACCAGACGCTTTCCTTGACTTTCTACAAACAAATGGGATTGACCCATTAATTTATACAGCCATTGAATCCA CCCCACGTTATATAAGGTTGAAGCCTGGAAGTGAAGCTTATTTGGAAGAGATAGAAGCTGAAATTAAGTGTAGGCTTCAGAAATTGAATTGGCTACCTGG GTTTTATTCACTTCCTCCTCATATTCAAATTGCTAACTCTAAGCCATATAAAGAAGGCAAGATATACGGGATTGATGCTGCTTCTGGGGCTGCTGTTTTG GCTTTGGATATTTCAGTGGGAGATCATGTTCTAGACCTATGTTGTGCTCCTGGTGCTAAGCTTTGCATGATATCAGACCTTCTTGGTGATTCGGGTTCTG TAACTGGTGTTGATGTTGCTAGGCACCGGCTAGCAGCTTGTAGAACAATGCTACAAAAATATGTATTAGGTGATGCATGCCGACTTTTTGTTGCTGATGG AACAACATTTTCCCTCATGCCCGTGAGGGATCATTTGGATTCTATATCATGTGAATTTGCATTGGAAGAAAAGAAAGACACTTTTAGGGAGTGGACTTCT AGGAGACCGTGGAAAGAAAGGAAAAGAGCAGCCAGAGCAAGGGAAAATGCTGCTTCGAGATTGGTTTCAGAAACTGATCATCCTGAACTTATTTTTTATG GGAAGGCTTCTGGGGTGGTTGGGCTTAGCAAAGATGAATTATATCAAACTGTGAGTAGCAGTGAAGTTTCAAGCTCCGGCTATGACAAGGTCCTTGTTGA TGCAGAATGTACCCATGATGGATCAATTAGACATATCCAAAAATTTGAGCATTGGGGATGGGAAACTCTAAATGGGCGTGTACTGAATGCAGAGAGATCT GATAACTTGACCACTCTTCAGTTAAAACTTCTAATAAATGGTTTTAGGCTATTAAGAGTTGGGGGTTCACTGGTCTACAGCACTTGCAGTTTGACAGTTT CCCAGAATGAAAATGTGGTCGAGTGGTTTCTCAAAGAAAATTCTTCTGCTGCATTGCAGGAGATAGAGGCTGCCAAAGACTGGCCATGCAAGAGTGGACG GATACCCAAGACCTTGCGCTTTGATCCAGTGACATCAAAAACTAGTGGACTTTTTGTAGCGAAGTTCACAAAACTGGCTGTTTAG
AA sequence Show only first row Show all	>Potri.007G056800.9 pacid=42766170 polypeptide=Potri.007G056800.9.p locus=Potri.007G056800 ID=Potri.007G056800.9.v4.1 annot-version=v4.1 MEEETSKLPLPDAFLDFLQTNGIDPLIYTAIESTPRYIRLKPGSEAYLEEIEAEIKCRLQKLNWLPGFYSLPPHIQIANSKPYKEGKIYGIDAASGAAVL ALDISVGDHVLDLCCAPGAKLCMISDLLGDSGSVTGVDVARHRLAACRTMLQKYVLGDACRLFVADGTTFSLMPVRDHLDSISCEFALEEKKDTFREWTS RRPWKERKRAARARENAASRLVSETDHPELIFYGKASGVVGLSKDELYQTVSSSEVSSSGYDKVLVDAECTHDGSIRHIQKFEHWGWETLNGRVLNAERS DNLTTLQLKLLINGFRLLRVGGSLVYSTCSLTVSQNENVVEWFLKENSSAALQEIEAAKDWPCKSGRIPKTLRFDPVTSKTSGLFVAKFTKLAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66180			S-adenosyl-L-methionine-depend...		Potri.007G056800 [exp]	0	1
AT4G35910			Adenine nucleotide alpha hydro...		Potri.006G051300 [exp]	5.00	0.8242
AT1G48950			C3HC zinc finger-like (.1)		Potri.015G052400 [exp]	6.24	0.8009
AT4G23540			ARM repeat superfamily protein...		Potri.006G050000 [exp]	6.92	0.8061
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Potri.010G094800 [exp]	9.16	0.8001
AT5G38730			Tetratricopeptide repeat (TPR)...		Potri.017G108600 [exp]	11.22	0.7919
AT4G18375			RNA-binding KH domain-containi...		Potri.004G066100 [exp]	11.53	0.7882
AT3G61610			Galactose mutarotase-like supe...		Potri.001G095300 [exp]	11.83	0.7775
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Potri.001G253200 [exp]	12.24	0.7772
AT1G19720			Pentatricopeptide repeat (PPR-...		Potri.002G030200 [exp]	13.78	0.7973
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Potri.006G249700 [exp]	14.69	0.7868

Compare expression of checked genes

Potri.007G056800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.