Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35987 410 / 6e-145 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G44170 56 / 8e-09 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G27400 53 / 1e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G27410 53 / 1e-07 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) AT2G26810 45 / 2e-05 Putative methyltransferase family protein (.1.2.3) AT2G26200 45 / 6e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G50850 43 / 0.0001 Putative methyltransferase family protein (.1) AT1G63855 40 / 0.0003 Putative methyltransferase family protein (.1.2.3) AT5G01470 40 / 0.001 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G017000 [exp] 56 / 7e-09 AT5G44170 316 / 3e-110 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G039000 [exp] 48 / 5e-06 AT5G27400 361 / 6e-123 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G025600 [exp] 47 / 7e-06 AT5G49560 289 / 2e-98 Putative methyltransferase family protein (.1) Potri.001G148200 [exp] 46 / 1e-05 AT5G44170 46 / 7e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.009G068400 [exp] 42 / 0.0002 AT2G26810 345 / 2e-121 Putative methyltransferase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028446 [exp] 431 / 4e-153 AT4G35987 402 / 6e-142 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041898 [exp] 301 / 2e-97 AT5G13700 349 / 2e-113 polyamine oxidase 1 (.1) Lus10015166 [exp] 50 / 1e-06 AT5G27400 377 / 9e-131 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024993 [exp] 50 / 2e-06 AT2G26200 726 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031516 [exp] 49 / 3e-06 AT5G27400 364 / 1e-125 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041869 [exp] 44 / 4e-05 AT1G63855 255 / 8e-87 Putative methyltransferase family protein (.1.2.3) Lus10028415 [exp] 42 / 0.0002 AT1G63855 248 / 2e-84 Putative methyltransferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF10294 [poplar] [flax] Methyltransf_16 Lysine methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.007G057000.1 pacid=42765709 polypeptide=Potri.007G057000.1.p locus=Potri.007G057000 ID=Potri.007G057000.1.v4.1 annot-version=v4.1 ATGGAAGCCAAAACAAATACAAAACCATCTTCTCTCAGATGGGCAATCTTACGCCAAGCCCTTCTTCGCAAAACTCGTGAAAGTCCCGATAATCAATCAC CAAGTGCTATCAAGCGCATTTCAAGAAAAACCCATCAAGGATTTAACTTTATACCAGGCCAAGTGGTTGAAGATCATGTTAACGAAGAATCAAACTTTAG AGATGTTTGCATTTGCTACACTTTGCCTGTTGATGGATCTCCCAAAATTCTTGTCAAGCAAAGAGTAAATAATGGTGTTGATTTGAGTGATTTTGAGGTT TCTGATAGATACAATGTCGATAACACTGGCCTAGTGTGTCAGTGGCCATCTGAAGATGTCCTTGCATATTTTTGCTTGTCACATGCAGACATGTTCAGGT CTAAAAGAGTTATTGAGCTTGGATCGGGATATGGCTTAGCTGGATTAGTTATTGCAGCAACAACTGAGGCATTGGAAGTTGTAATCTCAGATGGAAATCC AGTAGTAGTAGATTATATTCAGCATAGCATAGATGCCAACTCCACAGCATTTGGTAATACAAAAGTGAAGACTGTGACATTGCATTGGGATGAGGAAGTA ACTTATAATATCTCCAACACTTTTGATGTCATAGTTGCCAGTGACTGCACCTTTTTTAAGGAGTTCCACAATGCCCTTGCTTGTACCGTCAAACTCTTGT TAAAAAATGTTGGGCGCTCAGAAGCAATATTCTTCAGCCCTAAAAGAGGAGATTCATTGGACAAATTCCTAGAGAAAATTGAAGAAAATGGGCTGCATTT CTCTATAACAGAGAATTATGACTCTGAAGTTTGGAAGCGTCATCAAGGTTTCGTGGCTGGTGATGACACCTGGCCCAGCTATGAGAAGCATCACTGCTAT CCATTAATGGTCAGAATTACATTATAA
AA sequence Show only first row Show all	>Potri.007G057000.1 pacid=42765709 polypeptide=Potri.007G057000.1.p locus=Potri.007G057000 ID=Potri.007G057000.1.v4.1 annot-version=v4.1 MEAKTNTKPSSLRWAILRQALLRKTRESPDNQSPSAIKRISRKTHQGFNFIPGQVVEDHVNEESNFRDVCICYTLPVDGSPKILVKQRVNNGVDLSDFEV SDRYNVDNTGLVCQWPSEDVLAYFCLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPVVVDYIQHSIDANSTAFGNTKVKTVTLHWDEEV TYNISNTFDVIVASDCTFFKEFHNALACTVKLLLKNVGRSEAIFFSPKRGDSLDKFLEKIEENGLHFSITENYDSEVWKRHQGFVAGDDTWPSYEKHHCY PLMVRITL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35987			S-adenosyl-L-methionine-depend...		Potri.007G057000 [exp]	0	1
AT3G13230			RNA-binding KH domain-containi...		Potri.011G166000 [exp]	3.31	0.7799
AT1G14300			ARM repeat superfamily protein...		Potri.013G124050 [exp]	3.74	0.7760
AT5G04910			unknown protein		Potri.008G012100 [exp]	5.47	0.6914
AT4G01790			Ribosomal protein L7Ae/L30e/S1...		Potri.014G112200 [exp]	9.53	0.6906
AT3G60480			unknown protein		Potri.014G054300 [exp]	11.61	0.7208
AT4G39520			GTP-binding protein-related (....		Potri.007G080900 [exp]	11.61	0.7064
AT3G05810			unknown protein		Potri.013G007600 [exp]	16.12	0.7075
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Potri.002G042600 [exp]	16.52	0.6757
AT4G00026		SD3	SEGREGATION DISTORTION 3, unkn...		Potri.014G054400 [exp]	18.33	0.6634
AT5G50890			alpha/beta-Hydrolases superfam...		Potri.002G058100 [exp]	22.20	0.6599

Compare expression of checked genes

Potri.007G057000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.