Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66190 592 / 0 ATLFNR1 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) AT1G20020 588 / 0 ATLFNR2 ferredoxin-NADP\(+\)-oxidoreductase 2, LEAF FNR 2, ferredoxin-NADP(+)-oxidoreductase 2 (.1), ferredoxin-NADP(+)-oxidoreductase 2 (.2), ferredoxin-NADP(+)-oxidoreductase 2 (.3) AT1G30510 300 / 8e-100 ATRFNR2 root FNR 2 (.1.2.3) AT4G05390 298 / 3e-99 ATRFNR1 root FNR 1 (.1.2) AT4G24520 81 / 2e-16 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) AT4G30210 76 / 6e-15 AR2, ATR2 P450 reductase 2 (.1.2) AT3G02280 63 / 1e-10 Flavodoxin family protein (.1) AT1G15140 47 / 6e-06 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) AT5G20080 44 / 7e-05 FAD/NAD(P)-binding oxidoreductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G112900 [exp] 671 / 0 AT5G66190 576 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.001G371900 [exp] 295 / 1e-97 AT4G05390 635 / 0.0 root FNR 1 (.1.2) Potri.005G153800 [exp] 79 / 1e-15 AT4G24520 974 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.002G106566 [exp] 74 / 6e-15 AT4G24520 459 / 2e-159 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.006G167200 [exp] 72 / 2e-13 AT4G30210 965 / 0.0 P450 reductase 2 (.1.2) Potri.018G092100 [exp] 69 / 2e-12 AT4G30210 984 / 0.0 P450 reductase 2 (.1.2) Potri.004G101100 [exp] 53 / 2e-07 AT3G02280 811 / 0.0 Flavodoxin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028451 [exp] 600 / 0 AT5G66190 596 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Lus10041904 [exp] 572 / 0 AT5G66190 595 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Lus10038538 [exp] 286 / 6e-94 AT4G05390 624 / 0.0 root FNR 1 (.1.2) Lus10023266 [exp] 237 / 3e-75 AT4G05390 569 / 0.0 root FNR 1 (.1.2) Lus10015525 [exp] 74 / 3e-14 AT4G30210 1009 / 0.0 P450 reductase 2 (.1.2) Lus10025485 [exp] 73 / 7e-14 AT4G30210 681 / 0.0 P450 reductase 2 (.1.2) Lus10019996 [exp] 72 / 1e-13 AT4G30210 1013 / 0.0 P450 reductase 2 (.1.2) Lus10006972 [exp] 62 / 3e-10 AT4G30210 983 / 0.0 P450 reductase 2 (.1.2) Lus10002416 [exp] 59 / 2e-09 AT4G24520 474 / 1e-164 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Lus10017589 [exp] 59 / 4e-09 AT3G02280 810 / 0.0 Flavodoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0091 [poplar] [flax] NAD_Ferredoxin PF00175 [poplar] [flax] NAD_binding_1 Oxidoreductase NAD-binding domain
Representative CDS sequence Show only first row Show all	>Potri.007G057200.1 pacid=42766325 polypeptide=Potri.007G057200.1.p locus=Potri.007G057200 ID=Potri.007G057200.1.v4.1 annot-version=v4.1 ATGGCAGCTGCAGTGACTGCTGCGGTCTCTTTTCCTTCCTCAACCAAGTCTACTTCTCTTCCTTCAAGAACCATTCTCATTGCACCAGAAAGAATCACCT TGAGAAAGGTGCCAGTTCACTTCAGGGATGTGTCTGCTAGTGGCAGAGTGATTTCCATTAGAGCTCAAGTTACAACAGAGGCTCCAGCTAAGGTTGAGAA GGTATCAAAGAAAAATGAGGAGGGAGTGGTTGTTAACAAGTTCAAGCCTAAGAACCCTTACACTGGAAGATGTCTTTTGAACACTAAGATCACTGGTGAT GATGCTCCTGGTGAAACCTGGCACATGGTCTTCAGCACTGAAGGAGAGGTTCCGTATAGAGAAGGGCAATCAATTGGAGTGATTCCAGATGGAATTGATA AGAATGGGAAACCTCATAAACTAAGATTATATTCAATTGCTAGCAGTGCTATCGGTGACTTTGGAGACTCCAAAACTGTTTCTTTGTGTGTGAAGAGGCT TGTGTACACCAATGACCAAGGAGAAATTGTAAAAGGAGTTTGCTCAAATTTCTTGTGTGACTTGAAACCTGGAGCTGAAGTTAGTATTACAGGACCAGTT GGGAAAGAAATGCTCATGCCTAAAGATCCCAATGCCACTGTCATTATGCTTGGAACTGGAACTGGTATTGCTCCTTTCCGATCATTCTTGTGGAAAATGT TCTTCGAGAAGCATGATGACTACAAGTTCAATGGTTTGGCATGGCTCTTCTTGGGAGTCCCAACAAGTAGCTCATTGCTTTACAAGGAGGAATTCGAGAA GATGAAGGAGAAAGCCCCTGACAACTTCAGGCTAGACTTTGCGGTAAGTAGAGAGCAAACCAATGCCAAAGGTGAAAAGATGTACATCCAAACCCGGATG GCAGAATATGCAGAAGAGCTATGGGAATTACTAAAGAAAGACAACACCTACGTCTACATGTGTGGATTGAAAGGAATGGAGAAGGGGATTGATGATATAA TGGTGTCTTTGGCTGCTAAGGAGGAAATTGACTGGCTTGAGTACAAAAGAAGCTTGAAGAAAGCAGGGCAATGGAATGTGGAGGTCTATTAA
AA sequence Show only first row Show all	>Potri.007G057200.1 pacid=42766325 polypeptide=Potri.007G057200.1.p locus=Potri.007G057200 ID=Potri.007G057200.1.v4.1 annot-version=v4.1 MAAAVTAAVSFPSSTKSTSLPSRTILIAPERITLRKVPVHFRDVSASGRVISIRAQVTTEAPAKVEKVSKKNEEGVVVNKFKPKNPYTGRCLLNTKITGD DAPGETWHMVFSTEGEVPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGAEVSITGPV GKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNAKGEKMYIQTRM AEYAEELWELLKKDNTYVYMCGLKGMEKGIDDIMVSLAAKEEIDWLEYKRSLKKAGQWNVEVY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Potri.007G057200 [exp]	0	1
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Potri.015G010600 [exp]	1.00	0.9880	Pt-PPH1.1
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Potri.016G096600 [exp]	1.41	0.9860
AT1G18730		PnsB4, NDF6	Photosynthetic NDH subcomplex...		Potri.012G068500 [exp]	2.44	0.9818
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Potri.016G106900 [exp]	5.00	0.9770	FBP.1
AT1G09340		CSP41B, CRB, HI...	heteroglycan-interacting prote...		Potri.013G006100 [exp]	5.47	0.9760
AT3G02730		TRXF1, ATF1	thioredoxin F-type 1 (.1)		Potri.019G054800 [exp]	7.48	0.9758	PtrcTrxf
AT1G43670		FINS1, AtcFBP	FRUCTOSE INSENSITIVE 1, Arabid...		Potri.005G191400 [exp]	8.00	0.9593
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Potri.006G255600 [exp]	8.77	0.9748
AT4G12830			alpha/beta-Hydrolases superfam...		Potri.014G175700 [exp]	9.16	0.9730
AT3G26070			Plastid-lipid associated prote...		Potri.001G209600 [exp]	10.58	0.9760

Compare expression of checked genes

Potri.007G057200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.