Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36050 623 / 0 endonuclease/exonuclease/phosphatase family protein (.1.2) AT2G41460 94 / 7e-20 ARP apurinic endonuclease-redox protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G042000 [exp] 98 / 3e-21 AT2G41460 590 / 0.0 apurinic endonuclease-redox protein (.1.2) Potri.005G113301 [exp] 0 / 1 AT4G36050 152 / 4e-44 endonuclease/exonuclease/phosphatase family protein (.1.2) Potri.005G113250 [exp] 0 / 1 AT4G36050 0 / 1 endonuclease/exonuclease/phosphatase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028455 [exp] 677 / 0 AT4G36050 650 / 0.0 endonuclease/exonuclease/phosphatase family protein (.1.2) Lus10041907 [exp] 427 / 2e-141 AT4G36050 410 / 6e-135 endonuclease/exonuclease/phosphatase family protein (.1.2) Lus10000437 [exp] 90 / 1e-18 AT2G41460 541 / 0.0 apurinic endonuclease-redox protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family CL0167 [poplar] [flax] Zn_Beta_Ribbon PF06839 [poplar] [flax] zf-GRF GRF zinc finger
Representative CDS sequence Show only first row Show all	>Potri.007G057400.1 pacid=42765026 polypeptide=Potri.007G057400.1.p locus=Potri.007G057400 ID=Potri.007G057400.1.v4.1 annot-version=v4.1 ATGGGGAACCCAATAAAGATAGTATCTTACAACGTTAATGGCCTAAGACAACGAGTCTCGCAATTTGGGTCTCTCTCAAACCTCCTAAACACTTTCGATG CAGACATCATTTGCTTTCAGGAAACAAAATTAAGAAGACAAGAATTAACATCTGATTTAGTAATAGCTGATGGGTATGAATCTTTTTTTTCTTGCACGCG AACTAAAGATAAAGGCCGTACTGGGTACTCTGGGGTTGCAACATTTTGTCGTGTAAAGTCTGCATTTTCGAGTACTGAAGTGGCATTGCCGGTTGCGGCA GAGGAGGGTTTTACTGGGTTCATTGACCGGTGTAAAAGAAATGAAGGGCTTGAGGAGTTTGAGAAAGATGAGCTTGTTAAGGTTGATAGTGAGGGACGGT GTGTCGTTACTGATCATAATCATTTTGTTCTTTTTAACTTATATGGGCCTAGAGCAGCCCATGATGATACAGAGAGAATTGAGTTTAAGATGAAGTTTTT TAAGATATTACAGAAAAGATGGGAGAATCTTCTGCATGAGGGAAGGAGGGTATTCGTTGTTGGTGATCTCAATATTGCACCTACTGCTATGGATAGGTGT GATGCAGATTCAGATTTTGAGAAGAATGAATTCAGAAGATGGTTCAGGTCCATTCTAATGATGTCAGGTGGCCTCTTTGTTGATGTTTTCCGAGCAAAAC ATCCTGACAGAAGAGAAGCATACACGTGCTGGTCATCAAGTACAGGTGCTGAACTATTTAATTTTGGGAGTAGGATTGACCATATTCTGTGTGCTGGACC ATGCTTGCATCAAGAGCATGACTTGCAAGGCCATAACTTCTTATCCTGCCATGTCAAGGAATGTGACATATTGACACAGTATAAACGCTGGAAACCTGGA GACTCAACTAGGTGGAAGGGAGGGCGGGGCATCAAATTGGAAGGTTCAGATCACGCTCCTGTTTATATGAGTTTGGAAGAAATCTGTGATATACCCAGAC ATAGCACTCCACCTTTATCTGCTAGATATCTGCCCATGATTCATGGTGTCCAGCAAACTCTTGTGACCTTGTTGATGAAAAGGCAGGCTGCTACACAAAT TCAATCCTCCAGGATATCAAGTTCATTTTCAGATGGAGATGCTACCATAAAGGCATGCAGTGAAAGCATCAAAAGATCATTTAATGAATGCAGTGTATCT CGCCCATCTACAAGTCCGTCATGTTCTTTGACTGAAGAGTTTGATAGTGCCATTTCCAAAAGAGATGAGAATTCCAAGGATTTGACTGATGAGAATCAGG GCTGTCCTGACACTACAATGATACTGCAAAGTCAGCATACTAAGTTTGTGCCTGCTGAGGGAACCAAGAAAAAACCAAGAAAAAGTCGGTGTTCCCAGCT CTCTCTCAGATCTTTTTTCCAGAAAAGTCCGAACCTTAGCACTGGTGCTGAGAACTCTTCTACTAATGCTTCGCCTAGTCAGGCAGAACCAAACACTAGC AGTTACTCGAATGGTTCTCATGCACCGGGTGATAAAAGCAGCAGTCCCAGGCATTGCCAACTGAATCCAAGTGCAGGATCTCAGTATCAAGATAAGGGAA ATGATGGCTCGCTTGAGAGAGAGAAAAATAATGTTGCTTTGTTGGAATGGCAGAGGATACAGCAGCTCATGCGGAATAGTATTCCTGTTTGCAAGGGTCA TAAGGAACCCTGTGTTGCTCGGATAGTAAAGAAACCAGGTCGTACTTTTGGGCACAGATTTTTTGTCTGCTCACGAGCTGAGGGACCTGTATCCAATCCT GAAGCAAATTGTGGCTACTTCAAATGGGCTTCTTCAAAATCCCAGCGCAAATGA
AA sequence Show only first row Show all	>Potri.007G057400.1 pacid=42765026 polypeptide=Potri.007G057400.1.p locus=Potri.007G057400 ID=Potri.007G057400.1.v4.1 annot-version=v4.1 MGNPIKIVSYNVNGLRQRVSQFGSLSNLLNTFDADIICFQETKLRRQELTSDLVIADGYESFFSCTRTKDKGRTGYSGVATFCRVKSAFSSTEVALPVAA EEGFTGFIDRCKRNEGLEEFEKDELVKVDSEGRCVVTDHNHFVLFNLYGPRAAHDDTERIEFKMKFFKILQKRWENLLHEGRRVFVVGDLNIAPTAMDRC DADSDFEKNEFRRWFRSILMMSGGLFVDVFRAKHPDRREAYTCWSSSTGAELFNFGSRIDHILCAGPCLHQEHDLQGHNFLSCHVKECDILTQYKRWKPG DSTRWKGGRGIKLEGSDHAPVYMSLEEICDIPRHSTPPLSARYLPMIHGVQQTLVTLLMKRQAATQIQSSRISSSFSDGDATIKACSESIKRSFNECSVS RPSTSPSCSLTEEFDSAISKRDENSKDLTDENQGCPDTTMILQSQHTKFVPAEGTKKKPRKSRCSQLSLRSFFQKSPNLSTGAENSSTNASPSQAEPNTS SYSNGSHAPGDKSSSPRHCQLNPSAGSQYQDKGNDGSLEREKNNVALLEWQRIQQLMRNSIPVCKGHKEPCVARIVKKPGRTFGHRFFVCSRAEGPVSNP EANCGYFKWASSKSQRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36050			endonuclease/exonuclease/phosp...		Potri.007G057400 [exp]	0	1
AT4G02740			F-box/RNI-like superfamily pro...		Potri.002G051800 [exp]	17.66	0.6701
AT1G02960			unknown protein		Potri.002G208058 [exp]	18.16	0.6771
AT1G73350			unknown protein		Potri.004G066700 [exp]	20.29	0.6728
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Potri.003G044200 [exp]	21.49	0.6432
AT5G11470			bromo-adjacent homology (BAH) ...		Potri.006G244000 [exp]	33.31	0.6425
AT1G07080			Thioredoxin superfamily protei...		Potri.006G103000 [exp]	34.79	0.6639
AT5G10790		UBP22	ubiquitin-specific protease 22...		Potri.018G017000 [exp]	47.83	0.6602
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.002G152900 [exp]	53.38	0.6183
AT2G19930			RNA-dependent RNA polymerase f...		Potri.007G081300 [exp]	53.83	0.6357
AT1G06340			Plant Tudor-like protein (.1)		Potri.009G151200 [exp]	58.58	0.5892

Compare expression of checked genes

Potri.007G057400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.