Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CPK16,Pt-CPK16.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66210 870 / 0 CPK28 calcium-dependent protein kinase 28 (.1.2.3.4) AT2G17890 858 / 0 CPK16 calcium-dependent protein kinase 16 (.1) AT4G36070 827 / 0 CPK18 calcium-dependent protein kinase 18 (.1.2) AT5G12180 450 / 2e-153 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 447 / 3e-152 CPK34 calcium-dependent protein kinase 34 (.1) AT1G50700 440 / 1e-149 CPK33 calcium-dependent protein kinase 33 (.1) AT4G23650 439 / 3e-149 CDPK6, CPK3 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) AT3G50530 441 / 8e-149 CRK CDPK-related kinase (.1.2) AT3G20410 436 / 5e-148 CPK9 calmodulin-domain protein kinase 9 (.1) AT1G49580 436 / 7e-147 Calcium-dependent protein kinase (CDPK) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G113600 [exp] 964 / 0 AT5G66210 870 / 0.0 calcium-dependent protein kinase 28 (.1.2.3.4) Potri.005G135900 [exp] 456 / 1e-154 AT3G50530 954 / 0.0 CDPK-related kinase (.1.2) Potri.007G040800 [exp] 449 / 7e-152 AT3G50530 943 / 0.0 CDPK-related kinase (.1.2) Potri.004G143700 [exp] 444 / 3e-150 AT3G50530 843 / 0.0 CDPK-related kinase (.1.2) Potri.009G069200 [exp] 441 / 8e-150 AT5G12180 914 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.001G097400 [exp] 438 / 5e-149 AT4G23650 781 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.001G274700 [exp] 435 / 2e-147 AT5G12180 909 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.003G134000 [exp] 434 / 2e-147 AT4G23650 776 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.016G035500 [exp] 433 / 3e-146 AT2G41140 965 / 0.0 CDPK-related kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041914 [exp] 916 / 0 AT2G17890 875 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10028459 [exp] 909 / 0 AT2G17890 858 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10017537 [exp] 452 / 2e-155 AT4G23650 803 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Lus10002966 [exp] 450 / 7e-152 AT3G50530 1006 / 0.0 CDPK-related kinase (.1.2) Lus10038460 [exp] 441 / 6e-150 AT5G12180 916 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10008875 [exp] 437 / 2e-147 AT5G24430 800 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10017251 [exp] 431 / 3e-146 AT1G76040 807 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10032640 [exp] 430 / 6e-146 AT3G20410 790 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10000889 [exp] 429 / 2e-145 AT5G12180 907 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10036050 [exp] 428 / 9e-145 AT5G19360 908 / 0.0 calcium-dependent protein kinase 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.007G057600.1 pacid=42766177 polypeptide=Potri.007G057600.1.p locus=Potri.007G057600 ID=Potri.007G057600.1.v4.1 annot-version=v4.1 ATGGGTGCTTGTTTTTCTACCATCAACATTAGTGGCTCTAACAGCAACAACAATACCAAGGCTAATCACAACAGGAAAGAACCCACAAAGCCACAAACAA GGACAACAAAAGCAGCAACAAGAAAAAAGCAAGAAGTTGTGCACCATCATCATCAGATTAATAAGAATGTTAACAACGAGGCAGAAAAGAAGCTAAAGGT CAAAGAGAAGCAAAGTAGCAAGGCGATCCCTTGTGGGAAAAGAACAGATTTTGGTTATGATAAAGATTTTGATATCAGATATACAATTGGCAAATTGTTG GGTCATGGTCAATTTGGTTATACATATGTTGCTACTGATAAGGGTAATGGAGATCGAGTTGCTGTCAAGAGAATTGACAAAAATAAGATGGTTCTTCCTA TTGCTGTAGAGGATGTTAAACGAGAAGTCAGGATATTGCAAGAACTCACAGGCCACGAGAATGTAGTTCAGTTTCATAACGCATTTGAGGATGATTCTTA TGTATATATTGTTATGGAATTATGTGAAGGTGGAGAGTTGCTAGATCGGATATTGGCAAAGAAAGACAGTCGTTATACTGAGAAAGATGCAGCAGTAGTA GTGCGACAGATGCTAAAAGTTGCAGCTGAATGTCATTTGCATGGCTTGGTGCACCGCGACATGAAGCCTGAGAATTTTCTTTTCAAGTCAACCAAGGAGG ACTCGCCTCTTAAAGCCACGGATTTTGGTTTGTCAGACTTCATAAAACCAGGCAGGAAGTTTAAAGATATTGTTGGCAGTGCCTACTACGTTGCACCTGA AGTATTAAAACGCAATTCTGGACCTGAATCAGATGTCTGGAGTATTGGTGTGATTACATACATTTTGCTATGTGGGAGGCGTCCGTTTTGGGATAAGACT GAGGATGGTATATTTAAGGAGGTTTTAAGAAACAAGCCTGATTTTCGCCGTAAACCATGGCCAACCATTAGCACTAGTGCAAAAGATTTCGTGCAGAAGT TACTGGTGAAGGATCCTCGTGCAAGACTTACTGCTGCTCAAGCTCTATCACACCCATGGGTCAGAGAAGGAGGAGATGCATCTGAGATCCCTATTGACAT ATCTGTCCTGAGTAACATGCGACAATTTGTGAAGTACAGTCGTTTGAAGCAGTTTGCTCTAAGGGCATTGGCAAGCACGATTGATGAAGAGGAACTAGCT GATCTTAAGGATCAATTTGATGCCATTGATGTGGATAAAAATGGTGCTATTAGTCTTGAAGAAATGAGACAGGCCCTAGCTAAAGATCTTCCTTGGAAGT TGAAAGAATCACTTGTCTTAGAAATTGTTCAAGCGATTGACAGTAACACTGATGGACTTGTAGATTTCACTGAGTTTGTTGCAGCTGCTTTGCATGTCCA TCAATTGGAGGAACACAACTCTGAGAAGTGGCAGCTGCGGTCGCAGGCTGCTTTTGAGAAATTTGATATTGATAGAGATGGATATATAACTCCAGAAGAA CTTAGAATGCACTCAGGCTTGAGAGGTTCTGTTGACCCACTTCTTGAGGAGGCTGACATTGACAAGGATGGTAGAATAAGCCTTTCAGAATTCCGTAGAC TTCTAAGAACTGCTAGCATGAGTTCGCAAAATGTGCCAGACCCATCTGGGCACCGGAATTCAAAAAAACTATAG
AA sequence Show only first row Show all	>Potri.007G057600.1 pacid=42766177 polypeptide=Potri.007G057600.1.p locus=Potri.007G057600 ID=Potri.007G057600.1.v4.1 annot-version=v4.1 MGACFSTINISGSNSNNNTKANHNRKEPTKPQTRTTKAATRKKQEVVHHHHQINKNVNNEAEKKLKVKEKQSSKAIPCGKRTDFGYDKDFDIRYTIGKLL GHGQFGYTYVATDKGNGDRVAVKRIDKNKMVLPIAVEDVKREVRILQELTGHENVVQFHNAFEDDSYVYIVMELCEGGELLDRILAKKDSRYTEKDAAVV VRQMLKVAAECHLHGLVHRDMKPENFLFKSTKEDSPLKATDFGLSDFIKPGRKFKDIVGSAYYVAPEVLKRNSGPESDVWSIGVITYILLCGRRPFWDKT EDGIFKEVLRNKPDFRRKPWPTISTSAKDFVQKLLVKDPRARLTAAQALSHPWVREGGDASEIPIDISVLSNMRQFVKYSRLKQFALRALASTIDEEELA DLKDQFDAIDVDKNGAISLEEMRQALAKDLPWKLKESLVLEIVQAIDSNTDGLVDFTEFVAAALHVHQLEEHNSEKWQLRSQAAFEKFDIDRDGYITPEE LRMHSGLRGSVDPLLEEADIDKDGRISLSEFRRLLRTASMSSQNVPDPSGHRNSKKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66210		CPK28	calcium-dependent protein kina...		Potri.007G057600 [exp]	0	1	CPK16,Pt-CPK16.1
AT1G77600			ARM repeat superfamily protein...		Potri.002G084300 [exp]	3.31	0.7203
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Potri.007G002500 [exp]	5.74	0.6285
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Potri.002G195132 [exp]	6.00	0.6782
AT4G27500		PPI1	proton pump interactor 1 (.1)		Potri.011G119700 [exp]	6.24	0.6183
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Potri.006G061800 [exp]	6.48	0.6849
AT4G36210			Protein of unknown function (D...		Potri.007G016100 [exp]	6.92	0.6260
AT4G14500			Polyketide cyclase/dehydrase a...		Potri.008G162600 [exp]	11.53	0.6048
AT1G58060			RNA helicase family protein (....		Potri.004G222900 [exp]	24.39	0.6691
AT1G15240			Phox-associated domain;Phox-li...		Potri.001G183100 [exp]	24.49	0.6609
AT5G60570			Galactose oxidase/kelch repeat...		Potri.013G077800 [exp]	26.07	0.6041

Compare expression of checked genes

Potri.007G057600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.