Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17930 1068 / 0 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1) AT4G36080 998 / 0 phosphotransferases, alcohol group as acceptor;binding;inositol or phosphatidylinositol kinases (.1.2.3) AT1G50030 77 / 3e-14 TOR target of rapamycin (.1.2) AT5G40820 71 / 2e-12 ATATR, ATRAD3, ATR ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1) AT3G48190 52 / 1e-06 PIG1, ATATM, ATM pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G114300 [exp] 1247 / 0 AT2G17930 6266 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1) Potri.004G179000 [exp] 89 / 8e-18 AT5G40820 3459 / 0.0 ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1) Potri.001G289200 [exp] 82 / 6e-16 AT1G50030 4080 / 0.0 target of rapamycin (.1.2) Potri.009G084500 [exp] 82 / 8e-16 AT1G50030 4038 / 0.0 target of rapamycin (.1.2) Potri.015G076650 [exp] 67 / 4e-11 AT3G48190 3584 / 0.0 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Potri.004G147800 [exp] 59 / 2e-08 AT1G50030 252 / 2e-66 target of rapamycin (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028458 [exp] 1092 / 0 AT2G17930 6325 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1) Lus10041911 [exp] 1015 / 0 AT2G17930 989 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1) Lus10041910 [exp] 1010 / 0 AT2G17930 5862 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1) Lus10023991 [exp] 95 / 9e-20 AT5G40820 3276 / 0.0 ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1) Lus10025091 [exp] 94 / 2e-19 AT5G40820 3033 / 0.0 ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1) Lus10037246 [exp] 78 / 2e-14 AT1G50030 4101 / 0.0 target of rapamycin (.1.2) Lus10035661 [exp] 74 / 4e-13 AT1G50030 2590 / 0.0 target of rapamycin (.1.2) Lus10023840 [exp] 59 / 1e-08 AT1G50030 239 / 2e-62 target of rapamycin (.1.2) Lus10019489 [exp] 58 / 2e-08 AT3G48190 3373 / 0.0 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00454 [poplar] [flax] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase
Representative CDS sequence Show only first row Show all	>Potri.007G057850.1 pacid=42765327 polypeptide=Potri.007G057850.1.p locus=Potri.007G057850 ID=Potri.007G057850.1.v4.1 annot-version=v4.1 ATGGCTCAGCAAAGAATGCAGCAAACTGCAACTGCTGCTGGGGCTGGTTCTCTTGGATTGGTTGATGGAAATGCAAGAGTGCAGAGTCATGGAGGCAGCA GTGCCTTGGCCACAGATAGTCCAGTTCATCAAGGCGCTCAGTCTAGTGGTGGGATTGGAACTCATGACGGTGGAAACACTCACGGACAAGAACCTGAAAG ATCCACAGCAGTCGAAAGCAGCATGCATGCTGGGAATGAACAACCTTTACAACATAGTTCATTGATGATAAGTGAAAGTGGTCAGAATGCAGTGAGGCGT AATGGTGCTTTGGGCTTTGTTACCTCTGCTGCCAGTGCTTTTGAAGCTGCAAAGGAAATAATGGAGGCTCTTAGAAGCAAACACAGTAATTTGGCTGGTG AACTGGAGATTCTGCTTACTGAAATTGGTTCCCGGTTTGTGACTCTGCCAGAGGAGAGACTTCTTGCAGTTGTTAATGCACTGCTCCACCGCTGTTACAA GTACCCAACTGCCACTACAGGAGAGGTTCCCCAATCTCTTAAGAAAGAACTCTCTGGTGTTTGCAGGGCTTGCTTCTCTGCTGATGCTGTGAACAAGCAT GTTGATTTTGTGAGGGACTACAAGCAGGATTTTGAACGTGATCTTGATCCAGAAAGTACAGCTACTTTCCCTGCCACTCTTTCTGAACTGACTGCTCGAT TGAAACATTGGAAAAATGTTCTACAGAGCAATGTGGAGGACAGGTTTCCAACTGTCTTAAAGCTTGAAGAAGAAAGTAGGGTGCTGCGTGACTTCCATGT TGTTGATGTAGAGGTTCCAGGACAGTATTTTTGTGATCAGGAAATTGCACCAGACCACACAGTTAAGTTAGAAAGGGTTGGAGCTGATATTCCAATTGTT CGAAGGCATGGAAGCAGCTTCAGGCGTCTGACTCTCATTGGTTCTGATGGCTCTCAACGTCATTTTATTGTCCAGACATCCTTGACCCCAAATGCTAGAA GTGATGAAAGAATACTTCAGCTTTTCCGTGTAATGAACCAGATGTTTGATAAGCACAAAGAATCAAGACGTCGTCATTTATGCATTCACACTCCAATCAT CATTCCTGTATGGTCCCAGGTCCGCATGGTTGAAGATGATTTAATGTATAGCACTTTTCTTGAAGTTTATGAGAACCATTGTGCAAGGAATGACCGAGAA GCAGATCTCCCGATCACGTACTTCAAGGAGCAACTAAACCAAGCTATATCTGGCCAAATCTCTCCTGAAGCTGTTGTAGATCTTCGCCTCCAAGCATATA ATGAGATAACTAAGACTTGCGTGTCTGATGGCATCTTTTCCCAGTATATGTACAAGACTCTACTCAGTGGCAATCATATGTGGTCTTTTAAAAAGCAATT TGCAATCCATTTAGCACTTTCAAGTTTCATGTCTTTCATGCTGCAAATTGGAGGAAGGTCGCCTAATAAGATACTATTTGCTAAGAACACTGGCAAAATT TTCCAGACAGATTTTCACCCTGCATATGATGCAAATGGCATGATTGAGTTTAATGAACCAGTTCCTTTTCGGCTAACAAGGAACATGCAGGCATTCTTCT CCCATTTTGGAGTTGAAGGTCTTATTGTGTCTGCCATGTGTGCTGCAGCACAGGCTGTGGTTTCACCTAAACAAAGCCAACATTTATGGCATCAACTAGC CATGTTTTTCCGTGATGAGCTTCTGTCTTGGTCTTGGAGAAGACCGCCTGGGTTGAATCTAGGACCTGGTGCTGGAGGGAGTGTTATGAACCCTGCTGAC TTCCAGCACAAGGTCACCACCAACGTTGACAATGTCATCAGCCGAATCACTGGAATCGCTCCACAGTTTCTCTCTGAAGAGGAGGAAAATGCTGATGACC CACCACAGTCGGTGCAGAGGGGTGTCACTGAGTTGGTAGAAGCTGCTTTGACACCAAGGAACTTGTGCATGATAGATCCAACATGGCATCCGTGGTTTTA A
AA sequence Show only first row Show all	>Potri.007G057850.1 pacid=42765327 polypeptide=Potri.007G057850.1.p locus=Potri.007G057850 ID=Potri.007G057850.1.v4.1 annot-version=v4.1 MAQQRMQQTATAAGAGSLGLVDGNARVQSHGGSSALATDSPVHQGAQSSGGIGTHDGGNTHGQEPERSTAVESSMHAGNEQPLQHSSLMISESGQNAVRR NGALGFVTSAASAFEAAKEIMEALRSKHSNLAGELEILLTEIGSRFVTLPEERLLAVVNALLHRCYKYPTATTGEVPQSLKKELSGVCRACFSADAVNKH VDFVRDYKQDFERDLDPESTATFPATLSELTARLKHWKNVLQSNVEDRFPTVLKLEEESRVLRDFHVVDVEVPGQYFCDQEIAPDHTVKLERVGADIPIV RRHGSSFRRLTLIGSDGSQRHFIVQTSLTPNARSDERILQLFRVMNQMFDKHKESRRRHLCIHTPIIIPVWSQVRMVEDDLMYSTFLEVYENHCARNDRE ADLPITYFKEQLNQAISGQISPEAVVDLRLQAYNEITKTCVSDGIFSQYMYKTLLSGNHMWSFKKQFAIHLALSSFMSFMLQIGGRSPNKILFAKNTGKI FQTDFHPAYDANGMIEFNEPVPFRLTRNMQAFFSHFGVEGLIVSAMCAAAQAVVSPKQSQHLWHQLAMFFRDELLSWSWRRPPGLNLGPGAGGSVMNPAD FQHKVTTNVDNVISRITGIAPQFLSEEEENADDPPQSVQRGVTELVEAALTPRNLCMIDPTWHPWF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17930			Phosphatidylinositol 3- and 4-...		Potri.007G057850 [exp]	0	1
AT2G17930			Phosphatidylinositol 3- and 4-...		Potri.007G057900 [exp]	1.73	0.9182
AT3G26020			Protein phosphatase 2A regulat...		Potri.008G180000 [exp]	3.00	0.8791
AT2G18220			Noc2p family (.1)		Potri.003G213450 [exp]	6.16	0.8838
AT1G78060			Glycosyl hydrolase family prot...		Potri.005G168400 [exp]	7.07	0.8632
AT5G02880		UPL4	ubiquitin-protein ligase 4 (.1...		Potri.016G085200 [exp]	7.74	0.8544
AT1G17070			GC-rich sequence DNA-binding f...		Potri.019G043200 [exp]	9.59	0.8790
AT4G27680			P-loop containing nucleoside t...		Potri.012G025351 [exp]	10.58	0.8605
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.010G057900 [exp]	11.48	0.8331
					Potri.008G007100 [exp]	12.48	0.8485
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039000 [exp]	15.49	0.8244

Compare expression of checked genes

Potri.007G057850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.