Plant FIBer expression Database

Potri.007G058050 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G10890 105 / 8e-24 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001812
[exp]
274 / 9e-85 AT4G10890 105 / 6e-24 unknown protein
Lus10003198
[exp]
264 / 6e-82 AT4G10890 92 / 8e-20 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10382 DUF2439 Protein of unknown function (DUF2439)
Representative CDS sequence
>Potri.007G058050.1 pacid=42765457 polypeptide=Potri.007G058050.1.p locus=Potri.007G058050 ID=Potri.007G058050.1.v4.1 annot-version=v4.1
ATGGAGGATATCGATTGGAAGAAGAAGAAGAATAAGCAGAGATGGAGCGTAACCTACACAAAGCACATCAAGCAAAAGCGAAAAATCTATCAAGACGGTT
TCTTAGATCTTCACTTCTCCACAAACAAGGTCATGCTGTTTGACGAGTGCGAGAAGTTATTAGAATGCAGAATCTTGAAGGATGAAGAAGTTGTTAGTTC
CAGTGAAACCCTAACATTCAATTCCTTTCTTGTTGATGTTGGACATCCTGAGGTCGGTAGTGATAATAATAGTAATAATAAGCTACCGGTATCAGATTTG
AATTTTCACGGAAGAGATAGGAAAACTACCGAAAGGTTTGGCTTCATGCGTCGACAAAAGTTTAGAAATCCTTCGATTTCATCCCCCGGTGGAGAGGATA
CCGTGGAGAAGAATGAAGCACGACCGGATTGTCTAAGCACGTCGCAAAAGATCATCAAAGAGATCAAGAAGAGTGAACTGCGAAGGTATGTAGTGCCAGA
GAGCAGTCCAGATATGTCAAAAAGTGCAACAGAATGGCAGGTCTTATACACTACGCAAATGACTCAAAAGACCAAGAAGTACCACGATGGTTTCTTAAGA
CTTGCAAGTCGTGAATCCTTAGGGACGCAGATCATGCTGTATGATGCAAGCAAGAGACAATTAGATTGTAGGTTCCTCAAGAAAGATGAAATAATAAGTT
CTGGTGAATCAATATCATTTGATGCTCATTTGGTTGACATTGGAGAACCTGGAGGAGAAAATCAGCTTCTAGAGGATTTGAACATTCAAGGAAATAATTC
TAACGATGCTAGCAAACCGGGAACAATGCATGGACAGCCAAATGGTATTAAAGACAACAAATCCGTTGCAAAAGAGTGGTGTGCTCTTTACACTAGTCAT
ATAACTCAAAAGGCCAAGAAGTACCACAGTGGAATCCTCAGGCTTGCTTCTTGTGGTTCTTACAGAATGCAGGTCACTTTATTAAGTGAAGGTAAAACCT
TCCTGACCAGTAAGTTCCTCAGCTTGTCAGAAGATGTGAAAGTCGGAAGCAAGCTTGCACTGCCAAAATATTTGGTAGAAGTTGGCGAGCCATTAATGAG
TTCTGAAGGAAAATATCAAAACACTTATTTAAGGGAAGATGCAAATTCAAGAAGCATCTCTATTGAAGATAGAACCAAGTTGTGCAATGCTGTTCCTACA
AACAAAACTTTACGCAATGCCTGTCAAATCTTGTCCATTCTCCAAAAACCTGCTGTTCAGGGGAGTGTTGCTGTCCAGTGTATTGATAAGAGCATAAATG
CCTCGACTCTATCTGAAGACTCTGAATTATCGAGACAATCATTCCCACATGAAGGACCCAGTCAAAATTTGGATGATGGAGGATCAAGTAAAATTGTGGA
CATTGAGATATCTGCTGATCTCAACTTTTCCGAAGTGTTATCTACTTTTAGCGGTAATCAATTTCCCAATGACACTGAAGCTGCTGGAAATTTTGAACAG
TGTCATCCGGCCAAAGTAGAAGCTGACACCAAATGCTGTGATGAAGCTTTTGCTTCTAGTATTTCCAGTTTGATGGGTTCCTGTACTCACTGTCCTAATG
ATGATAAAAAGAAGACTCTTGATCAGCCCAAGAGTGCAAGGAAAATGGATGAATGGCCTACATTCGATCTTGGATTTTGA
AA sequence
>Potri.007G058050.1 pacid=42765457 polypeptide=Potri.007G058050.1.p locus=Potri.007G058050 ID=Potri.007G058050.1.v4.1 annot-version=v4.1
MEDIDWKKKKNKQRWSVTYTKHIKQKRKIYQDGFLDLHFSTNKVMLFDECEKLLECRILKDEEVVSSSETLTFNSFLVDVGHPEVGSDNNSNNKLPVSDL
NFHGRDRKTTERFGFMRRQKFRNPSISSPGGEDTVEKNEARPDCLSTSQKIIKEIKKSELRRYVVPESSPDMSKSATEWQVLYTTQMTQKTKKYHDGFLR
LASRESLGTQIMLYDASKRQLDCRFLKKDEIISSGESISFDAHLVDIGEPGGENQLLEDLNIQGNNSNDASKPGTMHGQPNGIKDNKSVAKEWCALYTSH
ITQKAKKYHSGILRLASCGSYRMQVTLLSEGKTFLTSKFLSLSEDVKVGSKLALPKYLVEVGEPLMSSEGKYQNTYLREDANSRSISIEDRTKLCNAVPT
NKTLRNACQILSILQKPAVQGSVAVQCIDKSINASTLSEDSELSRQSFPHEGPSQNLDDGGSSKIVDIEISADLNFSEVLSTFSGNQFPNDTEAAGNFEQ
CHPAKVEADTKCCDEAFASSISSLMGSCTHCPNDDKKKTLDQPKSARKMDEWPTFDLGF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G10890 unknown protein Potri.007G058050
[exp]
0 1
AT2G19520 ATMSI4, ACG1, N... MULTICOPY SUPPRESSOR OF IRA1 4... Potri.003G038800
[exp]
14.14 0.7950 Pt-ATMSI4.2,NFC907
AT4G22600 unknown protein Potri.001G120700
[exp]
14.49 0.7529
AT3G24495 ATMSH7, MSH7, M... MUTS HOMOLOG 6-2, ARABIDOPSIS ... Potri.006G159200
[exp]
14.96 0.8029
AT1G20720 RAD3-like DNA-binding helicase... Potri.002G008700
[exp]
17.34 0.7488
AT3G24495 ATMSH7, MSH7, M... MUTS HOMOLOG 6-2, ARABIDOPSIS ... Potri.006G156314
[exp]
25.03 0.8015
AT5G20590 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 ... Potri.006G071500
[exp]
26.15 0.7265
AT1G16970 KU70, ATKU70 ARABIDOPSIS THALIANA KU70 HOMO... Potri.011G107400
[exp]
33.49 0.7095 Pt-KU70.1
AT1G04730 CTF18 CHROMOSOME TRANSMISSION FIDELI... Potri.001G050300
[exp]
37.74 0.7749
AT1G10130 ATECA3, ECA3 ARABIDOPSIS THALIANA ER-TYPE C... Potri.014G014700
[exp]
44.88 0.7217 Pt-ECA3.3
AT1G77720 PPK1 putative protein kinase 1 (.1) Potri.002G087600
[exp]
50.27 0.7097

Potri.007G058050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.