Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38040 649 / 0 Exostosin family protein (.1) AT4G16745 259 / 3e-81 Exostosin family protein (.1.2) AT5G11610 257 / 4e-80 Exostosin family protein (.1.2) AT5G03795 251 / 2e-78 Exostosin family protein (.1) AT3G07620 238 / 1e-73 Exostosin family protein (.1) AT5G25310 228 / 9e-70 Exostosin family protein (.1) AT5G11130 226 / 4e-69 Exostosin family protein (.1) AT5G25820 227 / 1e-67 Exostosin family protein (.1) AT4G32790 225 / 1e-67 Exostosin family protein (.1) AT5G33290 222 / 4e-67 XGD1 xylogalacturonan deficient 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G147500 [exp] 700 / 0 AT4G38040 653 / 0.0 Exostosin family protein (.1) Potri.007G117800 [exp] 388 / 6e-133 AT4G38040 385 / 4e-132 Exostosin family protein (.1) Potri.015G087900 [exp] 365 / 8e-124 AT4G38040 352 / 8e-119 Exostosin family protein (.1) Potri.007G117600 [exp] 350 / 2e-118 AT4G38040 341 / 5e-115 Exostosin family protein (.1) Potri.007G116800 [exp] 345 / 8e-116 AT4G38040 333 / 4e-111 Exostosin family protein (.1) Potri.019G036500 [exp] 277 / 1e-88 AT4G38040 275 / 9e-88 Exostosin family protein (.1) Potri.003G079000 [exp] 260 / 2e-81 AT4G16745 636 / 0.0 Exostosin family protein (.1.2) Potri.006G118000 [exp] 249 / 1e-77 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.001G072500 [exp] 236 / 5e-73 AT4G38040 232 / 2e-71 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002664 [exp] 670 / 0 AT4G38040 677 / 0.0 Exostosin family protein (.1) Lus10012723 [exp] 668 / 0 AT4G38040 674 / 0.0 Exostosin family protein (.1) Lus10039142 [exp] 254 / 7e-79 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 248 / 4e-76 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10016058 [exp] 236 / 3e-74 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10008751 [exp] 238 / 8e-73 AT3G07620 542 / 0.0 Exostosin family protein (.1) Lus10023927 [exp] 231 / 4e-70 AT5G25820 561 / 0.0 Exostosin family protein (.1) Lus10025178 [exp] 229 / 6e-70 AT5G03795 471 / 5e-163 Exostosin family protein (.1) Lus10011121 [exp] 224 / 1e-68 AT5G19670 730 / 0.0 Exostosin family protein (.1) Lus10012973 [exp] 229 / 2e-68 AT5G19670 716 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.007G058400.1 pacid=42765054 polypeptide=Potri.007G058400.1.p locus=Potri.007G058400 ID=Potri.007G058400.1.v4.1 annot-version=v4.1 ATGACCGCCGGAAAGCTGTACCAACAATTACAGCAACAGCAACAAGTACAGCTATCCATGTGTTCTTTGAAAGGATCCCTCCTCACTCTGGCAATCCTAA CCCTAATCTCTTTCACATATCTCTCTTTCAACTCTCTCCACTCCTCTCCTTCTCCTTCCATCTCCGCGTCTTCCGTTTCTCTCCTGCCAGCGACGGAGAC AACGACGAAGACTGTAGTGGTTGATGTTGGCGATGGCGAGAACGATGAGATATCGGATCTGTATCATTCTCCACGTGTATTCAAATTAAATTACGAGGAA ATGGAACAGAATTTCAAGATTTATATATATCCAGATGGAGATCCAAACACATTTTATCAAACACCTAGGAAATTGACTGGAAAATACGCTAGCGAAGGGT ATTTTTTCCAGAATATAAGAGAAAGCAGGTTTCGAACTCTTGATCCTGATCAAGCCCACCTCTTCTTTATCCCCATCTCCTGCCACAAGATGCGCGGCAA GGGAACTTCTTACGAGAATATGACCGTAATTGTTGAGAATTATGTGGAAAGCTTAATAGCCAAGTATCCCTACTGGAATAGAACTTTGGGTGCAGATCAC TTCTTCGTCACCTGTCATGATGTTGGTGTAAGAGCCACTGAAGGAGTCCCATTTCTTATAAAGAATGCAATCAGAGTGGTATGCTCCCCTAGTTATGATG TCGGATTCATTCCACACAAAGATGTTGCTCTTCCTCAGGTCCTTCAGCCATTTGCCCTTCCTGCTGGAGGAAACGATGTAGAGAACAGGACAACTCTTGG TTTTTGGGCTGGCCATCGAAACTCTAGAATTAGAGTTATACTGGCACGTGTGTGGGAAAATGATACGGAACTAGATATTTCAAGCAACAGAATAAATAGG GCTACTGGACATCTTGTATATCAAAAGAGGTTTTATGGGACTAAATTCTGTATATGCCCCGGTGGCTCTCAGGTTAACAGTGCACGCATAGCTGACTCCA TCCATTATGGATGCGTTCCAGTAATATTGTCCAACTATTATGACCTGCCATTCAATGACATACTTGATTGGCATAAATTTTCCGTCATACTTAAGGAGCA AGATGTGTATCAGCTCAAGCAAATTCTGAAGGACATACCTGACAATCAATTTGTTTCACTGCATAAGAATTTAATTAAGGTACAGAAGCATTTCCAGTGG AATTCACCCCCAATAAAAAATGATGCATTCCATATGGTCATGTATGATCTTTGGCTGCGCCGCCATGTGATAAAATACTAG
AA sequence Show only first row Show all	>Potri.007G058400.1 pacid=42765054 polypeptide=Potri.007G058400.1.p locus=Potri.007G058400 ID=Potri.007G058400.1.v4.1 annot-version=v4.1 MTAGKLYQQLQQQQQVQLSMCSLKGSLLTLAILTLISFTYLSFNSLHSSPSPSISASSVSLLPATETTTKTVVVDVGDGENDEISDLYHSPRVFKLNYEE MEQNFKIYIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESRFRTLDPDQAHLFFIPISCHKMRGKGTSYENMTVIVENYVESLIAKYPYWNRTLGADH FFVTCHDVGVRATEGVPFLIKNAIRVVCSPSYDVGFIPHKDVALPQVLQPFALPAGGNDVENRTTLGFWAGHRNSRIRVILARVWENDTELDISSNRINR ATGHLVYQKRFYGTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWHKFSVILKEQDVYQLKQILKDIPDNQFVSLHKNLIKVQKHFQW NSPPIKNDAFHMVMYDLWLRRHVIKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38040			Exostosin family protein (.1)		Potri.007G058400 [exp]	0	1
AT4G38500			Protein of unknown function (D...		Potri.009G138000 [exp]	11.35	0.8656
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Potri.014G196200 [exp]	11.83	0.8339
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.006G129200 [exp]	14.66	0.8749	Pt-FLA11.1
AT5G28040	GeBP		DNA-binding storekeeper protei...		Potri.004G090900 [exp]	15.09	0.8068
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Potri.001G047100 [exp]	16.61	0.8695	GOS11.1
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Potri.012G111100 [exp]	17.49	0.8281	CNX1.2
AT5G42090			Lung seven transmembrane recep...		Potri.001G083100 [exp]	17.77	0.7836
AT3G24040			Core-2/I-branching beta-1,6-N-...		Potri.001G053800 [exp]	18.97	0.8552
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Potri.018G072400 [exp]	23.23	0.8627
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Potri.001G087500 [exp]	26.53	0.8221	Pt-BIP.2

Compare expression of checked genes

Potri.007G058400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.