Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15560 1000 / 0 AtCLA1, DXS, DXPS2, DEF, CLA1 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) AT3G21500 844 / 0 DXPS1 1-deoxy-D-xylulose 5-phosphate synthase 1 (.1.2) AT5G11380 674 / 0 DXPS3 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) AT5G50850 61 / 1e-09 MAB1 MACCI-BOU, Transketolase family protein (.1) AT2G45290 54 / 4e-07 Transketolase (.1) AT1G55510 51 / 2e-06 BCDH BETA1, BCDHBETA1 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) AT3G60750 50 / 7e-06 Transketolase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G171700 [exp] 1069 / 0 AT4G15560 1037 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.010G015200 [exp] 996 / 0 AT4G15560 1227 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.008G196500 [exp] 992 / 0 AT4G15560 1207 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.006G249700 [exp] 735 / 0 AT5G11380 949 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Potri.018G031800 [exp] 711 / 0 AT5G11380 958 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Potri.001G061400 [exp] 68 / 7e-12 AT5G50850 640 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.003G166400 [exp] 62 / 4e-10 AT5G50850 636 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.014G068200 [exp] 56 / 1e-07 AT2G45290 1174 / 0.0 Transketolase (.1) Potri.010G224600 [exp] 52 / 2e-06 AT3G60750 764 / 0.0 Transketolase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012724 [exp] 1220 / 0 AT4G15560 1030 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10002663 [exp] 1208 / 0 AT4G15560 1026 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10015517 [exp] 1045 / 0 AT4G15560 1020 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10006984 [exp] 1041 / 0 AT4G15560 1023 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10019991 [exp] 1041 / 0 AT4G15560 1018 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10001322 [exp] 1040 / 0 AT4G15560 1021 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10012789 [exp] 986 / 0 AT4G15560 1229 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10033987 [exp] 913 / 0 AT4G15560 1134 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10008084 [exp] 697 / 0 AT5G11380 960 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Lus10013117 [exp] 694 / 0 AT5G11380 958 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [poplar] [flax] THDP-binding PF02779 [poplar] [flax] Transket_pyr Transketolase, pyrimidine binding domain CL0591 [poplar] [flax] TKC_like PF02780 [poplar] [flax] Transketolase_C Transketolase, C-terminal domain CL0254 [poplar] [flax] THDP-binding PF13292 [poplar] [flax] DXP_synthase_N 1-deoxy-D-xylulose-5-phosphate synthase
Representative CDS sequence Show only first row Show all	>Potri.007G058500.1 pacid=42764895 polypeptide=Potri.007G058500.1.p locus=Potri.007G058500 ID=Potri.007G058500.1.v4.1 annot-version=v4.1 ATGGCGGTTTCTGCTTCTTTCTTTGTAGCAAACCATTCTTTCCCTCCATTCTTGAAGGCTCCTAGAAAATCAAACCCTTGTTCCACAAAACTGTTTTTCT TAAGAGCATCTGTCAGTAACTCAGAAGATTGTGAGGAAAGTAAAGTGGTGAAGAAAGCAGAAGATGGCTGGAAAATTGATTTCTCATCAGGAGAAAAACC ATCCACACCGTTACTGGACACAATCGATTACCCTTTTCACATGGACAACTTGTCCACACAGGATCTTGAACAATTAGCATCAGAATTGAGAGCAGATATT GTGTATAGTGTAGCAAAGACAGGAGGGCATCTTAGTTCAAGCTTAGGAGTAGTGGAGTTATCAGTGGCGCTGCATCATGTGTTCAACACCCCTGAAGACA AAATCATATGGGATGTTGGTCATCAGGCATATCCACATAAAATTCTAACAGGAAGAAGGTCTAGAATGCATACCATAAGGAAAACTTCAGGGCTCGCGGG ATTTCCTAAAAGGGATGAAAGTGTTTATGATGCTTTCGGTGCAGGACATAGTTCTACAAGCATCTCTGCTGGTCTCGGTATGGCAGTTGCAAGAGACCTC TTAGGGAAGAGCAACCATGTCATTTCTGTAATTGGAGATGGAGCTATGACAGCAGGACAAGCATATGAGGCCATGAACAATGCAGGATTCCTTGATTCTA ATCTAATCGTTATATTGAATGACAATAAGCAAGTATCTTTACCCACTGCCACTCTTGATGGTCCTGCAACCCCAGTTGGAGCCCTTAGTAGTACTTTGAC CAAGCTCCAAGCAAGCGCCAAATTTCGAAAACTTCATGAAGCTGCTAAAGGTATCACAAAGCAAATTGATGGGCAAACACATCAAGTTGCTGCAAAGGTA GATGAGTATGCTAGAGGAATGATCAGTGCTTCTGGCTCTACTCTATTTGAGGAGTTAGGATTATATTATATTGGTCCAGTGGATGGGCACAGCATCGAAG ACTTGGTGACCATATTTCAAAATGTGAAAGCAATGCCTGCCCCAGGACCAGTTCTGATTCATATTATTACAGAGAAAGGAAAGGGCTATCCTCCAGCCGA GGCAGCAGCTGATAAGATGCATGGAGTAGTCAAATTTGATGTAAAATCAGGCCAGCAGTTTAAGCTGAAATCCTCAACACTTTCATATACACGGTACTTT GCTGAATCTCTGATCAAAGAAGCTGAGGTAGACAACAAGATCGTAGCCATTCATGCAGCAATGGGTGGTGGAACAGGTCTCAATTATTTCCAGAAGAGGT TTCCAGATCGCTGCTTTGATGTGGGGATTGCTGAGCAGCATGCCGTTACATTTGCAGCTGGTTTAGCCACCGAGGGTCTCAAGCCCTTCTGTGCCATCTA CTCATCATTCCTGCAACGAGGATATGATCAGGTGGTACATGATGTAGATCTTCAAAAGTTACCAGTACGCTTTGCCATGGATCGAGCTGGTTTGGTTGGA GCAGATGGACCCACCCATTGTGGAGCATTTGATATCACATATATGGCTTGCTTACCCAACATGGTGGTCATGGCTCCATCTGACGAGGCTGAGCTGATGC ACATGGTTGCAACAGCAGCAGCCATAGATGACAGACCCAGCTGCTTCAGGTTCCCAAGGGGCAATGGGATTGGAACAGTTCTTCCTCCGAACAACAAAGG AATCGCTCTGGAGATTGGAAAAGGAAGAATACTGATGGAAGGCAATAGAGTTGCAATAATGGGATATGGTTCTATAGTTCAACAATGTGCAGAAGCTGCA AGCATGCTTAGAACCCAAGACATTTCTGTGACGGTAGCTGATGCAAGATTTTGCAAACCTCTGGATACGAATCTTATCAGGCAATTGGCTAAAGAGCATG AGATCCTAATTACTGTGGAAGAAGGTTCTATAGGAGGTTTTGGCTCCCATGTATCTCACTTCTTGAGTTCAACTGGTATTCTTGACGGACCACTCAAGTT GAGAGCAATGGTTCTTCCTGATAGATACATTGACCATGGATCACCTCAAGATCAGATTCAAGAAGCAGGGCTCTCCTCAAATCATATCACAGCAACAGTC TTGTCTATGTTGGGAAGGCCAAAAGAAGCTCTTCATGAGTTCAAATGA
AA sequence Show only first row Show all	>Potri.007G058500.1 pacid=42764895 polypeptide=Potri.007G058500.1.p locus=Potri.007G058500 ID=Potri.007G058500.1.v4.1 annot-version=v4.1 MAVSASFFVANHSFPPFLKAPRKSNPCSTKLFFLRASVSNSEDCEESKVVKKAEDGWKIDFSSGEKPSTPLLDTIDYPFHMDNLSTQDLEQLASELRADI VYSVAKTGGHLSSSLGVVELSVALHHVFNTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRKTSGLAGFPKRDESVYDAFGAGHSSTSISAGLGMAVARDL LGKSNHVISVIGDGAMTAGQAYEAMNNAGFLDSNLIVILNDNKQVSLPTATLDGPATPVGALSSTLTKLQASAKFRKLHEAAKGITKQIDGQTHQVAAKV DEYARGMISASGSTLFEELGLYYIGPVDGHSIEDLVTIFQNVKAMPAPGPVLIHIITEKGKGYPPAEAAADKMHGVVKFDVKSGQQFKLKSSTLSYTRYF AESLIKEAEVDNKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLATEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVG ADGPTHCGAFDITYMACLPNMVVMAPSDEAELMHMVATAAAIDDRPSCFRFPRGNGIGTVLPPNNKGIALEIGKGRILMEGNRVAIMGYGSIVQQCAEAA SMLRTQDISVTVADARFCKPLDTNLIRQLAKEHEILITVEEGSIGGFGSHVSHFLSSTGILDGPLKLRAMVLPDRYIDHGSPQDQIQEAGLSSNHITATV LSMLGRPKEALHEFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Potri.007G058500 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Potri.019G069600 [exp]	8.36	0.7362
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.011G070900 [exp]	11.83	0.7032	Pt-TPS7.1
AT5G45290			RING/U-box superfamily protein...		Potri.002G140500 [exp]	13.41	0.6432
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.012G118500 [exp]	21.44	0.6975
AT3G14470			NB-ARC domain-containing disea...		Potri.012G122900 [exp]	27.05	0.6878
AT5G13760			Plasma-membrane choline transp...		Potri.009G056700 [exp]	27.98	0.7007
AT1G18700			DNAJ heat shock N-terminal dom...		Potri.004G102875 [exp]	28.46	0.6305
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Potri.015G089300 [exp]	36.33	0.6855	ATGSL08.2
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Potri.001G154300 [exp]	38.98	0.6075
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Potri.003G096700 [exp]	39.49	0.6477	Pt-CEO1.1

Compare expression of checked genes

Potri.007G058500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.