Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35490 239 / 2e-82 MRPL11 mitochondrial ribosomal protein L11 (.1) AT1G32990 80 / 7e-19 PRPL11 plastid ribosomal protein l11 (.1) AT5G51610 57 / 2e-10 Ribosomal protein L11 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G150700 [exp] 78 / 4e-18 AT1G32990 303 / 3e-105 plastid ribosomal protein l11 (.1) Potri.001G450800 [exp] 77 / 7e-18 AT1G32990 308 / 4e-107 plastid ribosomal protein l11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035432 [exp] 262 / 2e-91 AT4G35490 272 / 2e-95 mitochondrial ribosomal protein L11 (.1) Lus10031045 [exp] 254 / 3e-88 AT4G35490 261 / 4e-91 mitochondrial ribosomal protein L11 (.1) Lus10010145 [exp] 77 / 6e-18 AT1G32990 306 / 7e-107 plastid ribosomal protein l11 (.1) Lus10017349 [exp] 77 / 9e-18 AT1G32990 306 / 6e-107 plastid ribosomal protein l11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00298 [poplar] [flax] Ribosomal_L11 Ribosomal protein L11, RNA binding domain PF03946 [poplar] [flax] Ribosomal_L11_N Ribosomal protein L11, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.007G058600.1 pacid=42764967 polypeptide=Potri.007G058600.1.p locus=Potri.007G058600 ID=Potri.007G058600.1.v4.1 annot-version=v4.1 ATGGCAACCCTCAAAGAGATCTTAACCCGCCGTCCGGTGGCAGCCACCATCCGCCTCACCGTTCCAGCTGGCGGAGCTAGACCAGCACCACCAGTAGGTC CAGCACTAGGTCAATACCGTCTAAATCTAATGGCTTTTTGCAAAGACTTCAATGCAAGAACTCAAAAGTACAAACCAGACACTCCCATGTCTGTTACCAT AACAGCTTTTAAAGACAACACTTTTGAGTTCACAGTTAAGTCACCTTCTGTTACTTGGTACTTAAAGAAAGCAGCAGGGGTTGAATCAGGTAGCGGTAGA CCAGGACACTTGGAAGCATCTACTGTGACTTTGAAACATGTTTATGAGATTGCTAAGGTGAAACAATCAGACCCTTATTGTCAGTATATGTCTCTTGAGT CTATTTGTAAGTCTATCATGGGTACTGCTAATACCATGGGGATTAAGGTTGTTAAGGACTTAGATTAG
AA sequence Show only first row Show all	>Potri.007G058600.1 pacid=42764967 polypeptide=Potri.007G058600.1.p locus=Potri.007G058600 ID=Potri.007G058600.1.v4.1 annot-version=v4.1 MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMSVTITAFKDNTFEFTVKSPSVTWYLKKAAGVESGSGR PGHLEASTVTLKHVYEIAKVKQSDPYCQYMSLESICKSIMGTANTMGIKVVKDLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35490		MRPL11	mitochondrial ribosomal protei...		Potri.007G058600 [exp]	0	1
AT5G35530			Ribosomal protein S3 family pr...		Potri.012G076800 [exp]	2.44	0.8541
AT5G59850			Ribosomal protein S8 family pr...		Potri.010G208700 [exp]	3.46	0.8669	Pt-WRP15.1
AT3G06040			Ribosomal protein L12/ ATP-dep...		Potri.015G077200 [exp]	4.24	0.8318
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Potri.001G069100 [exp]	4.47	0.8473	Pt-ARS27.2
AT5G14105			unknown protein		Potri.017G066388 [exp]	5.09	0.8152
AT3G06700			Ribosomal L29e protein family ...		Potri.008G107700 [exp]	5.91	0.8344
AT4G25315			Expressed protein (.1.2)		Potri.004G189300 [exp]	6.00	0.8407
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Potri.014G192601 [exp]	6.63	0.8476
AT3G62840			Small nuclear ribonucleoprotei...		Potri.014G129100 [exp]	6.92	0.8487
AT3G17910		EMB3121, SURF1	SURFEIT 1, EMBRYO DEFECTIVE 31...		Potri.012G045200 [exp]	6.92	0.7943

Compare expression of checked genes

Potri.007G058600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.