Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17520 674 / 0 ATIRE1-2, IRE1A ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-2, Endoribonuclease/protein kinase IRE1-like (.1) AT5G24360 642 / 0 AtIRE1b, ATIRE1-1 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) AT3G11870 337 / 2e-105 Endoribonuclease/protein kinase IRE1-like (.1) AT3G06030 87 / 2e-17 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT1G54960 84 / 2e-16 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT1G69220 84 / 3e-16 SIK1 Protein kinase superfamily protein (.1.2) AT1G09000 83 / 4e-16 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT2G34290 80 / 4e-16 Protein kinase superfamily protein (.1) AT3G59410 82 / 1e-15 ATGCN2, GCN2 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2) AT1G14000 81 / 1e-15 VIK VH1-interacting kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G254000 [exp] 787 / 0 AT5G24360 722 / 0.0 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) Potri.002G007201 [exp] 215 / 7e-65 AT5G24360 199 / 6e-60 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) Potri.014G035500 [exp] 93 / 3e-19 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.005G033400 [exp] 91 / 1e-18 AT1G09000 680 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.002G129100 [exp] 91 / 2e-18 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.005G062500 [exp] 87 / 3e-17 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.006G279900 [exp] 85 / 3e-17 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1) Potri.013G022700 [exp] 85 / 1e-16 AT1G09000 713 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.018G001800 [exp] 84 / 1e-16 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035979 [exp] 892 / 0 AT2G17520 618 / 0.0 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-2, Endoribonuclease/protein kinase IRE1-like (.1) Lus10030730 [exp] 798 / 0 AT5G24360 706 / 0.0 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) Lus10013212 [exp] 780 / 0 AT5G24360 701 / 0.0 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) Lus10002096 [exp] 93 / 5e-19 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10022254 [exp] 86 / 3e-17 AT5G14640 738 / 0.0 shaggy-like kinase 13 (.1) Lus10042750 [exp] 84 / 4e-17 AT4G08500 380 / 8e-129 MAPK/ERK kinase kinase 1 (.1) Lus10030435 [exp] 83 / 2e-16 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10032279 [exp] 84 / 3e-16 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10026626 [exp] 83 / 3e-16 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10013088 [exp] 82 / 5e-16 AT5G14640 741 / 0.0 shaggy-like kinase 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06479 [poplar] [flax] Ribonuc_2-5A Ribonuclease 2-5A CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.007G059000.1 pacid=42766642 polypeptide=Potri.007G059000.1.p locus=Potri.007G059000 ID=Potri.007G059000.1.v4.1 annot-version=v4.1 ATGAAGATGTTTTCTGCTCGTTTTTTCTGTTTATTATTGATTTTAATTTATATGTTTTCAAGTTCAATTGGAGATGTTTTGGATTCGGAGAGAGCAGGGA TTGTTTTGACTTCTGGTCTTGATTTCACCGAGTCAACTCGAGCTGGTGGAAGATCTCTCAAATCATTCTCACAATATGAAGATTCTACAGAATTAGTTGC TCTATTAAATGGAACGATTTATTTTAAAGATAAAATTTCTGGGAAAATTCTTTGGTCATTTTCGTCTGGAGGGCCAACATATTCTTCATATCAAGCACCA GCCAAACATGACAGTGATAAAGAAAAAGGCCCGGGAGGACTTACAGGGTTCTTTTTAGATTATGGGGATGACTGGCAGTTGTATGCACATTACAAATACT CAGGTGGAATGAAACTTCCAATGAATATTGAAGACTTTATTAAAATTACACCACACATGTCAGAGGATGGAGCTGTTATGCTTGGGTCTAAGAAAACTAC TGTGTTTGTAGTCGAGGCTAAAACTGGAAGACTTATCCGCACTTTTAAGTCCCCTGATTCTCCATCTTCGTTGCAGAGTTTTGAAGAAGGGAGTGGTTTA CATGATGACCTTAACAATAATAAGGATCTGCTAAAGTCTGGTTCATCAAATACCGCTCAGGTAATATACATCTTAAGGACAGATTATGCACTGCAAACGT TTGGTCCAAATTCAGACAAAGTTTCATGGAGTACAAAAGTGGCCACAATCGGGGCCACTTTTCTTTGTAAAGATGTCGAGAATCCATCAGAAGTATTTAA CTTGAGCTTTGAGCTTGATTCTGATACACCGTTATCATGTCAATCTAGAAGGATTGTTGTCCAACGACAGGACAAGTCACAGTATTCCTCTGGGGATATT CATGGTGAAGATAAGCTCCCATTGTCTGCTCCAAATCTAATGCTTACCACACAGCCTGGGGTTGAGAAATCATTAGATGATCATCATGCAAGAATGTTGC TTGCAGCTCCCAGTGAACATGGTAAAGAAATGCTTGCTTTGCCTTCTGCTTCTGCAGCAGGTGAAGTCCATTATAGGTTTGGAATGCTCCTCATGTGGTC AACAACACAGTCCTTCATTTTGTTTGTTGGTATCCTGTTATTGTGCTTTGTTTTGTACCTGAGTAAAGAAAGTTTTACCTTGGAGGGACAGTTGAGTGGT ACTGGATTAAAAGCTTCATCTTCCAAAAAGAAGAAAGCTAAAAAACCAGGAAAGAACAATGTAAGTGTTGAAAACGGGAATGGAATTGCACCGGGAGAGG GTGTTAACAAAACATTATCAGACCTTAATAAACTTGTTGATGGAGGCGCCAATGGACGCAGAATTGGTAAGCTATTTGTATCAAATACAGAAATTGCTAA GGGAAGCAATGGTACTGTTGTTCTTGAGGGTGTATATGAAGGTCGACTAGTTGCTGTGAAACGCCTTGTCCAAACTCATCATGATGTCGCTTGGAAAGAA ATTCAGAATCTCATTGCATCAGACAGACATCCAAATATTGTTCGATGGTATGGGGTGGAGTATGATGAGGATTTTGTGTACCTATCTCTGGAGCGTTGTA CATGCAGCTTAGATGACTTGATTCAAATATACTCCGATTCCTCTTTAAACCCTGTCTATGGCAAGGACCGAACTTCAAGAGCTGCAATAGAGCATAAACT TCGGTTGGACTCAGTGAAAGGAGTTATGCAGGATCTCAATTTATGGAAAGCAACAGGCCACCCTTCACCTCTATTACTAACTTTGATGAGGGATATGGTT TCTGGGCTTGTGCATTTGCACGAACTGGGAATAATTCATCGAGACTTGAAGCCTCAGAATGTGTTGATAATTAAGGAAAGATCTTTATGTGCTAAGCTCT CTGACATGGGTATCAGCAAGCGCCTCCTTGGAGATATGTCCTCATTAGCTTATCATGCTACTGGTTCTGGCAGTTCTGGTTGGCAAGCACCTGAACAGCT TCATCATAGACGCGAAACACGTGCAGTTGATTTATTTAGTTTGGGTTGTGTCCTCTTTTACTGCATCACTGGCGGCAGACATCCATTTGGTGATCATCTT GAACGTGATGTCAATATTGTGAAAAACCAAAAGGACCTGTTCTTGGTGGAGTATATTCCAGAAGCTGAGGATCTTATTTCCCGCTTATTAAATCCTGACC CTGAATTGAGGCCCAAGGCATTGGAAGTGCTGCACCATCCTATGTTTTGGAATTCAGAGCTGAGATTGTCATTTCTTCGCGACACAAGTGACAGAGTAGA ATTGGAAGATAGGGTCTCTGACTCAGATATTCTGAAAGCATTGGAGGGTATTGCACCAACAGCACTGGGTGGTGGAAAATGGAATGAAAAGATGGAACCT GCATTCATCACTGACATTGGTCGTCATAGGCGTTATAAGTTTGATGGCATTCGGGACTTGTTGCGAGTCATTCGAAACAAGTTGAATCATTATAGAGAAC TTCCCAATGAAATTCAGGAACTTGTAGGACCAGTCCCAGAAGGTTATGATAACTATTTTGCGAGTCGCTTCCCGAAGCTCCTGATTGAAGTATACAAAGT TGTGCGCAAATATTGTAGGGAAGAAGAATGGTTTCAGAAGTACATTAAAAGCAATGTTTAG
AA sequence Show only first row Show all	>Potri.007G059000.1 pacid=42766642 polypeptide=Potri.007G059000.1.p locus=Potri.007G059000 ID=Potri.007G059000.1.v4.1 annot-version=v4.1 MKMFSARFFCLLLILIYMFSSSIGDVLDSERAGIVLTSGLDFTESTRAGGRSLKSFSQYEDSTELVALLNGTIYFKDKISGKILWSFSSGGPTYSSYQAP AKHDSDKEKGPGGLTGFFLDYGDDWQLYAHYKYSGGMKLPMNIEDFIKITPHMSEDGAVMLGSKKTTVFVVEAKTGRLIRTFKSPDSPSSLQSFEEGSGL HDDLNNNKDLLKSGSSNTAQVIYILRTDYALQTFGPNSDKVSWSTKVATIGATFLCKDVENPSEVFNLSFELDSDTPLSCQSRRIVVQRQDKSQYSSGDI HGEDKLPLSAPNLMLTTQPGVEKSLDDHHARMLLAAPSEHGKEMLALPSASAAGEVHYRFGMLLMWSTTQSFILFVGILLLCFVLYLSKESFTLEGQLSG TGLKASSSKKKKAKKPGKNNVSVENGNGIAPGEGVNKTLSDLNKLVDGGANGRRIGKLFVSNTEIAKGSNGTVVLEGVYEGRLVAVKRLVQTHHDVAWKE IQNLIASDRHPNIVRWYGVEYDEDFVYLSLERCTCSLDDLIQIYSDSSLNPVYGKDRTSRAAIEHKLRLDSVKGVMQDLNLWKATGHPSPLLLTLMRDMV SGLVHLHELGIIHRDLKPQNVLIIKERSLCAKLSDMGISKRLLGDMSSLAYHATGSGSSGWQAPEQLHHRRETRAVDLFSLGCVLFYCITGGRHPFGDHL ERDVNIVKNQKDLFLVEYIPEAEDLISRLLNPDPELRPKALEVLHHPMFWNSELRLSFLRDTSDRVELEDRVSDSDILKALEGIAPTALGGGKWNEKMEP AFITDIGRHRRYKFDGIRDLLRVIRNKLNHYRELPNEIQELVGPVPEGYDNYFASRFPKLLIEVYKVVRKYCREEEWFQKYIKSNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17520		ATIRE1-2, IRE1A	ARABIDOPSIS THALIANA INOSITOL ...		Potri.007G059000 [exp]	0	1
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Potri.010G010448 [exp]	1.73	0.8490
AT2G33590			NAD(P)-binding Rossmann-fold s...		Potri.005G257700 [exp]	3.46	0.8500
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.015G019100 [exp]	3.87	0.8542	CNGC.1
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Potri.006G086600 [exp]	6.48	0.8327
AT5G09630			LisH/CRA/RING-U-box domains-co...		Potri.001G286300 [exp]	8.71	0.8057
AT3G17920			Outer arm dynein light chain 1...		Potri.012G045300 [exp]	8.83	0.8339
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G137000 [exp]	10.95	0.7994
AT5G60250			zinc finger (C3HC4-type RING f...		Potri.009G150100 [exp]	12.24	0.8207
AT2G24170			Endomembrane protein 70 protei...		Potri.018G106600 [exp]	14.49	0.8171
AT4G03220			Protein with RNI-like/FBD-like...		Potri.015G011200 [exp]	16.00	0.7704

Compare expression of checked genes

Potri.007G059000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.