Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17510 1546 / 0 EMB2763 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) AT1G77680 280 / 1e-79 Ribonuclease II/R family protein (.1) AT5G02250 91 / 2e-18 ATMTRNASEII, RNR1, EMB2730 ribonucleotide reductase 1, EMBRYO DEFECTIVE 2730, ARABIDOPSIS THALIANA MITOCHONDRIAL RNASE II, Ribonuclease II/R family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G086400 [exp] 291 / 2e-83 AT1G77680 1062 / 0.0 Ribonuclease II/R family protein (.1) Potri.005G174800 [exp] 281 / 7e-80 AT1G77680 1078 / 0.0 Ribonuclease II/R family protein (.1) Potri.006G086200 [exp] 104 / 1e-22 AT5G02250 1085 / 0.0 ribonucleotide reductase 1, EMBRYO DEFECTIVE 2730, ARABIDOPSIS THALIANA MITOCHONDRIAL RNASE II, Ribonuclease II/R family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029500 [exp] 1660 / 0 AT2G17510 1543 / 0.0 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) Lus10025614 [exp] 303 / 1e-87 AT1G77680 1048 / 0.0 Ribonuclease II/R family protein (.1) Lus10039601 [exp] 271 / 2e-84 AT2G17510 249 / 2e-77 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) Lus10014833 [exp] 282 / 4e-80 AT1G77680 1033 / 0.0 Ribonuclease II/R family protein (.1) Lus10028065 [exp] 160 / 6e-40 AT1G77680 551 / 1e-179 Ribonuclease II/R family protein (.1) Lus10009880 [exp] 112 / 3e-26 AT1G77680 363 / 5e-117 Ribonuclease II/R family protein (.1) Lus10009879 [exp] 81 / 8e-16 AT1G77680 337 / 9e-107 Ribonuclease II/R family protein (.1) Lus10024387 [exp] 81 / 3e-15 AT5G02250 1066 / 0.0 ribonucleotide reductase 1, EMBRYO DEFECTIVE 2730, ARABIDOPSIS THALIANA MITOCHONDRIAL RNASE II, Ribonuclease II/R family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00773 [poplar] [flax] RNB RNB domain CL0280 [poplar] [flax] PIN PF13638 [poplar] [flax] PIN_4 PIN domain
Representative CDS sequence Show only first row Show all	>Potri.007G059100.1 pacid=42765655 polypeptide=Potri.007G059100.1.p locus=Potri.007G059100 ID=Potri.007G059100.1.v4.1 annot-version=v4.1 ATGTTACACAGTAAAACTTTTAACAAGAAAACCAGAGGTGGAAGAATTCAAAAGCTTGTAAGAGAAGTGTATTTGAGAGATGATATTTACTGTGGAGCTT TGTTTTGCAAATCTTGTGAAGATAAATCGAAAGCTCGGCTGACCGCTACTGCGTCTACTATTCTCATTCTTGACACTAATGTTGTTCTTAATCAGATTGA TTTGCTTGAGAATCCGGCTGTAGAAGATGTGGTTTTGCTATCTGTGGTTTTACAAGAGGTGAAGAATAAAAATTCGGCTGTTTATGGAAGAATTAGGAAT CTTATTGATAGTCCTGCTAGGAGATTCGTTGTTTTCTCTAATGAATTCCACAGGGATACTTATGTGCAGATCATGGCAGGAGAAAGTCCGAATGATAGAA ACGACAGAGCCATTAGGGTTGCTGCAAGGTGGTATCAGAGTCATCTTGGTGAAGCGGTGAAGGTTCTACTTATTACTAATGATAGAGAAAATAAGAGGAA GGCTACTGAAGAGGGTGTTTCTGCTGAGACAATTGAATCATATGTGAAATCATTGGGGCAACCAGCTTTACTTGACTTGCTTGTTCAGCCAGCTTCTGAA GATGTAATCATGGAAGAAGTCGAAGATATGAGACCTTCAAAGAGGAAAGTTGTTTATCCTGAGCATAAGCCCATGTCAGAGATTACTTCTGGTTTGACCA AAGGAATATACCATCAAGGAAAACTTCGTGTGAACCGTTACAATCCATTTGAAGCATATGTTGGAAGTGAGAGCATTGGTGATGAAATAGTCATTTATGG GCGTGGAAATATGAATAGGGCTTTTGATGGTGATGTTGTGGCAGTGGAACTTCTTCCACAAGACCAATGGCACGAGGAGAAATCGTTATCTATAGTAGAT GAAGAGGATGAAGAAGAAGATGTTCATCTAGTCCCAGGTAGTTCAGATGATGCTCCCAGGACTTCAATTCCAGTATCAAGTTCAACTTTTGACACAAATC CTGTCTCATCTCGCCCATCTGGTCTTGTTGTTGGTATTATAAAGCGGAATTGGCATTCTTACTGTGGATCTTTAGAGCCCATGCCAATGCCTGCAGGAAG TGGTGGTCTTGTATATGCTTTATTTGTCTCCAAAGACCGTAGAATTCCTAAGATTCGGATTCAAACTCGGCAGCTTGACAATCTTTTGGACAAAAGAATT ATTGTAGCAGTTGATTCCTGGGACCGTCAATCACGACATCCTTCTGGCCATTATATACGCAGTATAGGACAGATAGGCGATAGAGATACCGAAACTGAGT TGGTCTTGATAGAGAATGATATTGATGCAAGACCGTTTTCTGCCCAAGTTTTGGCATGCTTGCCACCACTACCATGGTCGGTTTCCTCTAAAGATTTGAA CGAATCAAATAGAGTTGACTTACGACATTTGTGTGTCTTTAGTGTTGATCCTCCAGGATGCAAGGATATTGATGATGCACTACACTGTACTATGCTTCCA ACTGGAAATTTTGAAGTTGGAGTCCACATTGCTGATGTAACGAATTTTGTTCACCCTGGCACCCCACTTGATGATGAGGCTACACAAAGGGGTACATCTG TCTACCTTGTTGAGCGTCGTATAGACATGCTTCCAAAACCTTTAACAGAAGATATATGTTCTCTTCGAGCTGATGTGGAAAGGCTAGCCTTTTCTGTTAT TTGGGAAATGACCCCTGAAGCAGAGATTATTTCTACAAAATACACAAAAAGTGTCATCAAATCACGTGCAGCATTATCTTATGTTGAAGCTCAGGCTAGG ATGGATGATAGTCGATTAGTTGATCCAGTAACTAAAGATTTGAGAAATATGAATGCTCTGGCAAAGATAATGAGGCAGAGGCGAATTCATAGAGGAGCAC TAACACTTGCTTCTGCTGAAGTCAAATTTCAGATTGATACCGAGACGCATGATCCTCTTGATATTGGTATGTATCAGATTCGAGAAGCAAACCAAATGGT TGAGGAGTTTATGCTTGCTGCAAATGTTTCTGTAGCTGAAAAAATTCTTAAAGAATTTCCGGAGTGTTCACTATTGAGGCGTCATCCTACTCCGACAAAA GAGATGCTTGGACCTTTGCTTCGTACAGCTGCTGCTGTTGGTTTGAACTTGGATGTCACATCTTCAAAAGCACTAGCCGATTCACTTGACCGTGCTGTGG GTGACGATCCATACTTTAACAAGCTGATCCGTATAATGGCAACTAGATGTATGACACAGGCAGTATATTTCTGTAGTGGAGAACTCAGCCCTCCAGAATT TCTTCATTATGGGCTTGCAGCACCTCTTTATACTCATTTCACATCACCTATCAGGAGATATTCTGACGTGATTGTACATAGGTTGCTTGCTGCATCCATA GGAATATACAAACTTCCAACTATATTCCGAGACAGGCCCCAGCTCACTAGTATTGCTGATAATTTGAATTATCGGCATAGGAATGCTCAGATGGCAAGCC GAGGCTCAGTAGAGCTCCATACTCTCATATACTTCAGAAACCGGCCGACAGACACAGAGGCCAGAATAGTAAAGATGAGATCAAATGGTTTTATTGTATT TGTTCCCAAGTTTGGTATAGAAGGGCCAGTATACCTGACAATGAGAGGTGATAAAGGGGGTGGGGAATGGTTTGTAGATGAGCAGCAGCAGAAGATTAGG AAGATGGATGGTAGTGTTTCATACAGTATCCTGCAGGCGGTGAAAATTCACTTGGAGGTTTTAGAACCGAAACCAAATCGGCCAAAACTCCAACTAACCC TCCTCTAA
AA sequence Show only first row Show all	>Potri.007G059100.1 pacid=42765655 polypeptide=Potri.007G059100.1.p locus=Potri.007G059100 ID=Potri.007G059100.1.v4.1 annot-version=v4.1 MLHSKTFNKKTRGGRIQKLVREVYLRDDIYCGALFCKSCEDKSKARLTATASTILILDTNVVLNQIDLLENPAVEDVVLLSVVLQEVKNKNSAVYGRIRN LIDSPARRFVVFSNEFHRDTYVQIMAGESPNDRNDRAIRVAARWYQSHLGEAVKVLLITNDRENKRKATEEGVSAETIESYVKSLGQPALLDLLVQPASE DVIMEEVEDMRPSKRKVVYPEHKPMSEITSGLTKGIYHQGKLRVNRYNPFEAYVGSESIGDEIVIYGRGNMNRAFDGDVVAVELLPQDQWHEEKSLSIVD EEDEEEDVHLVPGSSDDAPRTSIPVSSSTFDTNPVSSRPSGLVVGIIKRNWHSYCGSLEPMPMPAGSGGLVYALFVSKDRRIPKIRIQTRQLDNLLDKRI IVAVDSWDRQSRHPSGHYIRSIGQIGDRDTETELVLIENDIDARPFSAQVLACLPPLPWSVSSKDLNESNRVDLRHLCVFSVDPPGCKDIDDALHCTMLP TGNFEVGVHIADVTNFVHPGTPLDDEATQRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWEMTPEAEIISTKYTKSVIKSRAALSYVEAQAR MDDSRLVDPVTKDLRNMNALAKIMRQRRIHRGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEKILKEFPECSLLRRHPTPTK EMLGPLLRTAAAVGLNLDVTSSKALADSLDRAVGDDPYFNKLIRIMATRCMTQAVYFCSGELSPPEFLHYGLAAPLYTHFTSPIRRYSDVIVHRLLAASI GIYKLPTIFRDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRNRPTDTEARIVKMRSNGFIVFVPKFGIEGPVYLTMRGDKGGGEWFVDEQQQKIR KMDGSVSYSILQAVKIHLEVLEPKPNRPKLQLTLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17510		EMB2763	EMBRYO DEFECTIVE 2763, ribonuc...		Potri.007G059100 [exp]	0	1
AT4G30150			unknown protein		Potri.004G167600 [exp]	1.00	0.9019
AT1G13120		EMB1745	embryo defective 1745 (.1)		Potri.008G183500 [exp]	3.46	0.8538
AT1G75200			flavodoxin family protein / ra...		Potri.002G260700 [exp]	6.63	0.8504
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Potri.019G047300 [exp]	12.40	0.8310
AT1G08840		EMB2411	embryo defective 2411, DNA rep...		Potri.014G180200 [exp]	12.96	0.8295
AT2G04540			Beta-ketoacyl synthase (.1)		Potri.002G219500 [exp]	13.03	0.7895
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Potri.004G228700 [exp]	13.41	0.8516
AT1G45332			Translation elongation factor ...		Potri.003G109900 [exp]	14.86	0.8292
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.013G056600 [exp]	15.49	0.8447
AT4G01570			Tetratricopeptide repeat (TPR)...		Potri.002G182900 [exp]	19.23	0.8456

Compare expression of checked genes

Potri.007G059100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.