Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51390 341 / 9e-117 DHHC-type zinc finger family protein (.1) AT2G40990 70 / 5e-13 DHHC-type zinc finger family protein (.1) AT5G05070 69 / 1e-12 DHHC-type zinc finger family protein (.1) AT4G24630 64 / 3e-11 DHHC-type zinc finger family protein (.1) AT3G56930 64 / 3e-11 DHHC-type zinc finger family protein (.1.2) AT2G14255 64 / 4e-11 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT3G26935 64 / 4e-11 DHHC-type zinc finger family protein (.1) AT5G50020 64 / 6e-11 DHHC-type zinc finger family protein (.1.2) AT5G41060 63 / 9e-11 DHHC-type zinc finger family protein (.1.2) AT3G48760 62 / 2e-10 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G104700 [exp] 530 / 0 AT3G51390 374 / 1e-129 DHHC-type zinc finger family protein (.1) Potri.005G104800 [exp] 406 / 2e-143 AT3G51390 274 / 1e-91 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 77 / 2e-15 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2) Potri.006G027400 [exp] 69 / 7e-13 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2) Potri.018G121200 [exp] 69 / 1e-12 AT5G20350 951 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.006G027500 [exp] 67 / 4e-12 AT5G05070 456 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 67 / 4e-12 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G065500 [exp] 66 / 1e-11 AT4G24630 543 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 66 / 1e-11 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028384 [exp] 427 / 3e-150 AT3G51390 374 / 2e-129 DHHC-type zinc finger family protein (.1) Lus10041837 [exp] 421 / 5e-148 AT3G51390 369 / 2e-127 DHHC-type zinc finger family protein (.1) Lus10012096 [exp] 75 / 1e-14 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10010447 [exp] 74 / 5e-14 AT3G56930 451 / 3e-152 DHHC-type zinc finger family protein (.1.2) Lus10016754 [exp] 69 / 1e-12 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10038701 [exp] 67 / 2e-12 AT5G04270 298 / 2e-102 DHHC-type zinc finger family protein (.1) Lus10024377 [exp] 66 / 6e-12 AT3G09320 426 / 9e-152 DHHC-type zinc finger family protein (.1) Lus10022451 [exp] 67 / 7e-12 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10010852 [exp] 66 / 7e-12 AT3G09320 418 / 6e-149 DHHC-type zinc finger family protein (.1) Lus10035177 [exp] 66 / 1e-11 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.007G060100.3 pacid=42766112 polypeptide=Potri.007G060100.3.p locus=Potri.007G060100 ID=Potri.007G060100.3.v4.1 annot-version=v4.1 ATGTCAATTTTCAATTTCTGCTACCGTATTGTCCCCTGCCTTGCCGATCCAGCAAGGAGATCTTCATTGGGGTTGAAAGCAGCATTAGTGGTGTTGCATA TTGTATATGCAGGGACTCTCTTTCTTTTTTATAGTGATTTGATAGAGAAAACCAAAGAAGAGCCATGGTACACTGCAATATATCTGTTGCTGTTTGTTGC AGCATTGATTCAATACTTTGTTACATCGTGTTCTTCTCCCGGCTATGTCCTTGATGCAATGAGGGATCTGAATGAGAAAAATTCATTATATAGAAGGTCA TCAATGTTGTCAAAACAGCCTGCTTCAAGCAAAAGTGGAAGCTTTGTTATCACTGTGGAAGGAAGTCAGTCTGAAAGAAATATTCCAGGAAGTAATGTTA CATCGTGGACAAAGCTAGTTCTAGACATGTATCCCCCTGGAACATCTATTAGGAAAATTGTCAGAGATCATGCGAAGTACTTACCCATCACTAACCTTTC AAAATTCACTCCTCCACGAGCAAAGCATTGCCATGATTGTGACAAATGTGTTCTTCAGTTTGACCATCATTGTGTTTGGCTTGGGACGTGCATTGGCCGG GGAAATCATTGTCGATTTTGGTGGTACATTTTTGAAGAAACAGCGCTATGCCTTTGGACTGGCATCTTGTACATCACATGCTTGAAGGCTAACATCTCAA GAGTTTGGTGGAAGGATGCAATTATGATCCTGCTATTGGTTACTTTGTCAATTGCCTTGATTTTTCTCCTGCTGCTCCTCATTTTCCATAGCTATCTTAT TCTGACATATCAAACTACCTATGAACTCGTAAGACGTAGACGCATTCCATATCTAAGAGGAATTCCTGAACGAGTGTATCCATTCAGTAAAGGAGTCTGC AGAAATTTGTATGACTTTTGTTTTGCTCGAAGCAGCATATATAGTTTGGAAAGATTACCCACAGCAATGGAACTTGAAGAAAAGTCAAGGCCTTACACAT GCTTAGATTTTTTGACCGGCCGTTGTTGCTGA
AA sequence Show only first row Show all	>Potri.007G060100.3 pacid=42766112 polypeptide=Potri.007G060100.3.p locus=Potri.007G060100 ID=Potri.007G060100.3.v4.1 annot-version=v4.1 MSIFNFCYRIVPCLADPARRSSLGLKAALVVLHIVYAGTLFLFYSDLIEKTKEEPWYTAIYLLLFVAALIQYFVTSCSSPGYVLDAMRDLNEKNSLYRRS SMLSKQPASSKSGSFVITVEGSQSERNIPGSNVTSWTKLVLDMYPPGTSIRKIVRDHAKYLPITNLSKFTPPRAKHCHDCDKCVLQFDHHCVWLGTCIGR GNHCRFWWYIFEETALCLWTGILYITCLKANISRVWWKDAIMILLLVTLSIALIFLLLLLIFHSYLILTYQTTYELVRRRRIPYLRGIPERVYPFSKGVC RNLYDFCFARSSIYSLERLPTAMELEEKSRPYTCLDFLTGRCC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51390			DHHC-type zinc finger family p...		Potri.007G060100 [exp]	0	1
AT5G13260			unknown protein		Potri.003G164100 [exp]	8.71	0.8906
AT5G48520		AtAUG3	augmin 3, unknown protein		Potri.014G191100 [exp]	8.83	0.8848
AT4G27630		GTG2	GPCR-type G protein 2 (.1.2.3)		Potri.013G077700 [exp]	9.00	0.8406
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Potri.001G152000 [exp]	9.89	0.8952
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.001G472800 [exp]	10.95	0.8629	WRKY2.2
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Potri.018G067700 [exp]	11.95	0.8723
AT5G19070			SNARE associated Golgi protein...		Potri.010G030800 [exp]	13.96	0.8712
AT1G04555			unknown protein		Potri.010G064500 [exp]	14.24	0.8816
AT5G53340			Galactosyltransferase family p...		Potri.003G136000 [exp]	17.57	0.8889
AT3G22290			Endoplasmic reticulum vesicle ...		Potri.006G023900 [exp]	20.00	0.8878

Compare expression of checked genes

Potri.007G060100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.