Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATPLDDELTAA.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35790 1281 / 0 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT2G42010 886 / 0 PLDBETA1 phospholipase D beta 1 (.1) AT4G11850 861 / 0 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G00240 860 / 0 PLDBETA2 phospholipase D beta 2 (.1) AT4G11840 858 / 0 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G11830 847 / 0 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT3G15730 690 / 0 PLDALPHA1 phospholipase D alpha 1 (.1) AT1G52570 679 / 0 PLDALPHA2 phospholipase D alpha 2 (.1) AT5G25370 656 / 0 PLDALPHA3 phospholipase D alpha 3 (.1) AT1G55180 493 / 7e-163 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G105600 [exp] 1573 / 0 AT4G35790 1289 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G016100 [exp] 1222 / 0 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 1190 / 0 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.003G015000 [exp] 1111 / 0 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.014G074700 [exp] 875 / 0 AT2G42010 1464 / 0.0 phospholipase D beta 1 (.1) Potri.002G152100 [exp] 865 / 0 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1) Potri.001G112100 [exp] 863 / 0 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.018G131200 [exp] 700 / 0 AT1G52570 1204 / 0.0 phospholipase D alpha 2 (.1) Potri.003G032800 [exp] 687 / 0 AT3G15730 1419 / 0.0 phospholipase D alpha 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041855 [exp] 1293 / 0 AT4G35790 1280 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10004156 [exp] 1089 / 0 AT4G35790 1079 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10012699 [exp] 1083 / 0 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10028401 [exp] 1082 / 0 AT4G35790 1050 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10001293 [exp] 1082 / 0 AT4G35790 1071 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10005627 [exp] 1004 / 0 AT4G35790 969 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10006819 [exp] 883 / 0 AT2G42010 1465 / 0.0 phospholipase D beta 1 (.1) Lus10005782 [exp] 876 / 0 AT2G42010 1456 / 0.0 phospholipase D beta 1 (.1) Lus10014146 [exp] 841 / 0 AT2G42010 1254 / 0.0 phospholipase D beta 1 (.1) Lus10006718 [exp] 835 / 0 AT2G42010 1264 / 0.0 phospholipase D beta 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0479 [poplar] [flax] PLD PF00614 [poplar] [flax] PLDc Phospholipase D Active site motif CL0479 [poplar] [flax] PF12357 [poplar] [flax] PLD_C Phospholipase D C terminal
Representative CDS sequence Show only first row Show all	>Potri.007G060300.3 pacid=42765620 polypeptide=Potri.007G060300.3.p locus=Potri.007G060300 ID=Potri.007G060300.3.v4.1 annot-version=v4.1 ATGGCTGAAAACTCCAGTCACAAGCAGCACATCTACCTTCACGGTGACCTGGACTTGTTCATAGTACAAGCCAGATCTTTACCAAACATGGATGTTATCT CCAAAAACATCCGCCAATGCTTCGGTGTTTGCACTCCTTCTTCCACCACCGTCACCACCACCACCACCACCACCAAATCCATCGGCCACCCGCACCACCA CCCCAGTGATGCCGCCAAGAAAATCCGCAACCACCGTCACATAATCACAAGTGATGCATACGTGACAGTGACAGTGCCTCAGGTGACACTCGCCCGCACG CGCGTGTTGAAGAATGCAACAAGCCCCATTTGGGAGCAAAGGTTCAATATCCCATTAGCTCATCCTGTTAAAGATATTGAATTTCACGTCAAAGACAATG ATTTGTTCGGTGCAGAGTTGATAGGGACTGCGAATATACCTGCATCAACTGTGGCGTTGGGGGAGGATATTAAGGGATGGTTTCCTATAATTGCTCCATC AGGGAAACCACCAAAGCCTGACACAGCTCTTTATTTGGAAATGAAATTCACACCTTTTGAGAAAAACCCTTTATACCGGAATGGATTTGGAGGCGATCCT GAAGTAAAAGGGGTGAGACATACTTATTTTCCGGTCCGAAAAGGTTGTCATGTGACACTGTATCAAGATGCTCATGGAAAGGATCATGACTTGCCTGAGA TTGAGATTGATGGTGGGAAGGTTTATAAGCAAGAGAATTGTTGGGAGGATATTTGTTATGCAATATCCGAAGCTCATCATATGATTTATATTGTTGGTTG GTCTGTTTTTTGTAAGATTAAGTTGGTTAGAGAGCCAACCAGGCCATTGCCAAGAGGTGGGGATTTGACACTTGGGGAGTTGTTGAGGTATAAGAGTGAG GAAGGTGTGAGGGTTTTGTTGTTGGTTTGGGATGATAGGACTTCTCATGATAAATTTGGGATTGAAACTGCAGGAGTTATGGCAACACATGATGAAGAAA CCAGGAGGTTTTTCAAGCATTCATCTGTCACTTGTGTGTTGGCACCTCGATATGCCAGCAGTAAGCTCAGTTTTCTCAAACAACAGACTGTTGGAACAAT CTTTACGCACCATCAGAAATGCGTTCTTGTGGACACACAAGCATATGGTAATAACAGGAAGATAACTGCATTTATAGGAGGCATTGATCTCTGTGATGGA CGGTACGATACCCCAGAGCATCGATTGTTTCATGATCTCAACACTGTCTTCAAGGATGATTTCCACAATCCAACATTTTCTGCTGGAACCAAGGCCCCAA GGCAACCCTGGCATGACTTGCATTGTAAAATTGATGGGCCTGCTGCATATGATGTTCTCATAAACTTTGAGCAGCGTTGGAGGAAGGCAACAAAGTGGAC AGAATTGGGACTACATTTCAAAAGAACATCTCATTGGAGTGATGATTCATTAATAAAGATAGAAAGGATTTCTTGGATTCTAAGTCCTCCCCTTTCTAAA ACAAAGGCTGGAACCACTATAGTTCCAGGGGACGATCCCACGGCTTTTGTTTCCAGCGAAGAAGACCCTGAGCACTGGCATGTCCAGATTTTTAGGTCCA TTGACTCAGGATCATTGAAAGGATTTCCCAAAACTATTGATGAGTGTCAGGCTAAGAACCTAGTTGTTGCAAAGGATCTGGTTGTAGATAAAAGCATTCA AACAGCATACATACAAGCCATCAGATCTGCTCAGCATTTCATATATATTGAGAATCAGTATTTTCTTGGATCTTCATATGCGTGGCCATCATATAACGAT GCAGGAGCTGATAATCTAATTCCAATGGAGTTGGCGTTAAAGATTGCTAGTAAAATTAGAGCCAAGGAGAGATTCGCAGTATATGTTGTTATACCATTGT GGCCGGAGGGTGATCCCAAGACTAACACCGTGCAAGAAATTCTCTTTTGGCAGAGCCAGACAATGCAAGCAATGTATGAAAAAATTGCGCAGGAACTTAA ATCAATGGATCTTGTAGATTCACATCCTCAAGACTACCTCAATTTCTATTGCATTGGTAAACGGGAAGAAATTCCCCAAGAATTGTCAAGTGATAATGGT GGATTGATCTCCGAGGCTTTTAAATTTCAGCGGTTCATGATTTATGTCCATGCAAAGGGAATGATAGTGGATGATGAGTATGTGATAGTGGGATCTGCAA ATATTAACCAGAGATCCATGGCTGGATCTAAAGACACTGAGATAGCTATGGGTTCATATCAACCCCATCATACATGGGTTACAAAGAAGAAACATCCACG TGGACAGGTTTATGGATATAGAATGTCACTATGGCGGGAGCATCTTGGTGAGGTAGATGAACTGTTCATGGAACCTGATAATTTGCTTTGTGTGAAGAGA GTAAATCACACTGCTGAGGAAAACTGGAAGAAATTCACAGATCCGAACTTCAAACTGTTGAAAGGACATCTTCTCAAGTATCCTTTGAAGGTAGATGCTG ATGGGAAGGTAGGTCCCCTTCCTGGATCAGAGAATTTCCCAGATGTTGGTGGCAAGGTACTTGGAGCTCATTCTACCACAATTCCTGATGCGCTAACGAC ATAA
AA sequence Show only first row Show all	>Potri.007G060300.3 pacid=42765620 polypeptide=Potri.007G060300.3.p locus=Potri.007G060300 ID=Potri.007G060300.3.v4.1 annot-version=v4.1 MAENSSHKQHIYLHGDLDLFIVQARSLPNMDVISKNIRQCFGVCTPSSTTVTTTTTTTKSIGHPHHHPSDAAKKIRNHRHIITSDAYVTVTVPQVTLART RVLKNATSPIWEQRFNIPLAHPVKDIEFHVKDNDLFGAELIGTANIPASTVALGEDIKGWFPIIAPSGKPPKPDTALYLEMKFTPFEKNPLYRNGFGGDP EVKGVRHTYFPVRKGCHVTLYQDAHGKDHDLPEIEIDGGKVYKQENCWEDICYAISEAHHMIYIVGWSVFCKIKLVREPTRPLPRGGDLTLGELLRYKSE EGVRVLLLVWDDRTSHDKFGIETAGVMATHDEETRRFFKHSSVTCVLAPRYASSKLSFLKQQTVGTIFTHHQKCVLVDTQAYGNNRKITAFIGGIDLCDG RYDTPEHRLFHDLNTVFKDDFHNPTFSAGTKAPRQPWHDLHCKIDGPAAYDVLINFEQRWRKATKWTELGLHFKRTSHWSDDSLIKIERISWILSPPLSK TKAGTTIVPGDDPTAFVSSEEDPEHWHVQIFRSIDSGSLKGFPKTIDECQAKNLVVAKDLVVDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYND AGADNLIPMELALKIASKIRAKERFAVYVVIPLWPEGDPKTNTVQEILFWQSQTMQAMYEKIAQELKSMDLVDSHPQDYLNFYCIGKREEIPQELSSDNG GLISEAFKFQRFMIYVHAKGMIVDDEYVIVGSANINQRSMAGSKDTEIAMGSYQPHHTWVTKKKHPRGQVYGYRMSLWREHLGEVDELFMEPDNLLCVKR VNHTAEENWKKFTDPNFKLLKGHLLKYPLKVDADGKVGPLPGSENFPDVGGKVLGAHSTTIPDALTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.007G060300 [exp]	0	1	Pt-ATPLDDELTAA.1
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Potri.014G056800 [exp]	4.35	0.7670
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Potri.010G069000 [exp]	8.60	0.7519
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Potri.009G118800 [exp]	10.09	0.7363	Pt-APL3.2
AT5G01320			Thiamine pyrophosphate depende...		Potri.006G102500 [exp]	15.87	0.6932	Pt-PDC1.4
AT4G11270			Transducin/WD40 repeat-like su...		Potri.001G098700 [exp]	18.97	0.6344
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.007G120900 [exp]	22.91	0.6742
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Potri.004G019366 [exp]	23.23	0.6707
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Potri.001G276200 [exp]	23.57	0.7286
AT1G78020			Protein of unknown function (D...		Potri.007G089200 [exp]	24.73	0.6093
AT1G71870			MATE efflux family protein (.1...		Potri.013G115600 [exp]	26.32	0.6627

Compare expression of checked genes

Potri.007G060300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.