Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66055 463 / 8e-162 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) AT5G40160 178 / 2e-52 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT2G14255 70 / 8e-13 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT5G53470 66 / 9e-12 ACBP1 acyl-CoA binding protein 1 (.1) AT4G27780 66 / 2e-11 ACBP2 acyl-CoA binding protein 2 (.1) AT5G02620 65 / 4e-11 ATANK1, ANK1 ankyrin-like1 (.1) AT4G32500 64 / 1e-10 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT5G60070 60 / 2e-09 ankyrin repeat family protein (.1) AT4G22200 60 / 2e-09 AKT3, AKT2/3 potassium transport 2/3 (.1) AT2G03430 58 / 2e-09 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G105800 [exp] 685 / 0 AT5G66055 457 / 3e-159 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.001G295200 [exp] 159 / 6e-45 AT5G40160 317 / 4e-108 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Potri.003G103400 [exp] 72 / 3e-14 AT4G19150 234 / 2e-77 Ankyrin repeat family protein (.1.2) Potri.001G130500 [exp] 71 / 1e-13 AT4G19150 222 / 1e-72 Ankyrin repeat family protein (.1.2) Potri.015G010200 [exp] 65 / 2e-11 AT4G27780 432 / 3e-152 acyl-CoA binding protein 2 (.1) Potri.006G223800 [exp] 64 / 1e-10 AT5G51160 176 / 1e-49 Ankyrin repeat family protein (.1) Potri.013G062000 [exp] 63 / 1e-10 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.003G163200 [exp] 62 / 3e-10 AT5G13300 1146 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Potri.012G017700 [exp] 61 / 7e-10 AT4G27780 432 / 4e-152 acyl-CoA binding protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041853 [exp] 465 / 3e-162 AT5G66055 465 / 2e-162 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Lus10028399 [exp] 404 / 9e-138 AT5G66055 398 / 3e-135 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Lus10014522 [exp] 175 / 1e-50 AT5G40160 322 / 3e-109 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10032165 [exp] 150 / 2e-41 AT5G40160 293 / 3e-98 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10005246 [exp] 67 / 2e-11 AT3G28880 275 / 4e-79 Ankyrin repeat family protein (.1) Lus10001799 [exp] 66 / 3e-11 AT5G13300 1201 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Lus10020505 [exp] 62 / 4e-10 AT2G14255 389 / 2e-131 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10002621 [exp] 62 / 4e-10 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10001414 [exp] 61 / 4e-10 AT4G19150 245 / 9e-82 Ankyrin repeat family protein (.1.2) Lus10005910 [exp] 61 / 5e-10 AT4G27780 430 / 3e-151 acyl-CoA binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF13637 [poplar] [flax] Ank_4 Ankyrin repeats (many copies)
Representative CDS sequence Show only first row Show all	>Potri.007G060400.1 pacid=42766745 polypeptide=Potri.007G060400.1.p locus=Potri.007G060400 ID=Potri.007G060400.1.v4.1 annot-version=v4.1 ATGTCCCTGCCAACTCTGCTAAACCCACAAACCCCAAAACTACACGTTCCTCTATCTCTCAAGTTTCCATCTTTCAAAACTCTAAAAATCCCAACAAAAA TCCACTCCTCCTCACCTTCTTTACAATCCCAATTCCCTATACGAAATGACAGTTTTGAAGACCAAGACCATGCCATTGGTGACTGTATAGTCTTTGAAGA AGGCATTTTTGAAGACCCTTATTTGGAAAACAATTCAAATGCCATTGAGGATTCAAAGTTGAGGTCTGTTCAGAAAAAGATAAAAAGGGTTGTTCCTAAA ATTGAAGAAGAGAATTTGGTGCCAGAGAATTGGAGAGAAGTGCAAGCAGAGATTAATATTGGTAAAAAAGAAAGGAGAAAGATTGCTCAAGAATTGGAAT ATAATAAAAAATTTGAAAGGAAAAGGAAAGGGTTGGTTCCTATTAGGAATGTGAATTTAGAGGAGTATCAGGCTTTTAGAGAAGCTAAATTGGCACAGTT GAAGCCACTTGTGCTTGATTATCCACAGAGTATTAAAGAGGAGGAGGAGGAGGAGGAGGAGGATGAAGTGAGGGAGATTGTTAGTGAGAGAGTGAAAGGG AAGAATCCTAGATGGGCGGTCTATGGGAGAGGTTTAGATGATGTTAGAGAGTTTTTTAACGGTGAGGGTTATGAGCCTGGTGAACAGAAATCTGAAGGTA AGCGCAAGTTGTTTACGAAAGAGGAAAAGGTTTTGTTAAATAAGCGGGTACCTGATCTAGCAGTTGCTACCTCTAGAAAATGGCTGCCTGTCCACACACT TGCTGCATCAGGAGAATTCTACCTTATGGATGCGTTGTTGAAGCATAATGTTGATATCAATGCTGTGGATGTGAATGGTTGGACTGCACTTCACAGAGCA ATAATATGCAAAAAGCAAGCTATAATCAGCTATCTGTTGAGAGAATCAGCAGATCCTTTTGTACATGATGCAGAGGGTGCCACCTTGATGCATTATGCAG TTCAAACAGCATCTGCTCCAGCTATCAAAGTTCTTCTGTTATATAACGTCGATATAAACCTTCAGGACAATGATGGATGGACACCATTACATCTTGCTGT TCAAGCCCGAAGAACGGATATAGTGAAGCTTTTATTAATAAAAAGAGCAGATAGTACAATTAAAAACCTGGATGGCTTAACAGCACTCGATCTCTGCCTC TATTCTGGCAGAGACACAAGGACTTGTGAGCTTATCAAGCTGTTTAAGCAGTTTGCGAAGAAATCAACTTTGGCCAAAAACCCTTATAATGCTTCAGCTT CCTAA
AA sequence Show only first row Show all	>Potri.007G060400.1 pacid=42766745 polypeptide=Potri.007G060400.1.p locus=Potri.007G060400 ID=Potri.007G060400.1.v4.1 annot-version=v4.1 MSLPTLLNPQTPKLHVPLSLKFPSFKTLKIPTKIHSSSPSLQSQFPIRNDSFEDQDHAIGDCIVFEEGIFEDPYLENNSNAIEDSKLRSVQKKIKRVVPK IEEENLVPENWREVQAEINIGKKERRKIAQELEYNKKFERKRKGLVPIRNVNLEEYQAFREAKLAQLKPLVLDYPQSIKEEEEEEEEDEVREIVSERVKG KNPRWAVYGRGLDDVREFFNGEGYEPGEQKSEGKRKLFTKEEKVLLNKRVPDLAVATSRKWLPVHTLAASGEFYLMDALLKHNVDINAVDVNGWTALHRA IICKKQAIISYLLRESADPFVHDAEGATLMHYAVQTASAPAIKVLLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKRADSTIKNLDGLTALDLCL YSGRDTRTCELIKLFKQFAKKSTLAKNPYNASAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Potri.007G060400 [exp]	0	1
AT1G02150			Tetratricopeptide repeat (TPR)...		Potri.002G139400 [exp]	1.00	0.9877
AT1G80480		PTAC17	plastid transcriptionally acti...		Potri.003G030100 [exp]	2.44	0.9834
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Potri.005G105800 [exp]	3.16	0.9791
AT5G53080			Tetratricopeptide repeat (TPR)...		Potri.015G010800 [exp]	3.31	0.9758
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Potri.016G070900 [exp]	4.12	0.9740
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.001G075800 [exp]	4.24	0.9735
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Potri.010G117200 [exp]	4.89	0.9764	APG2.1
AT2G01870			unknown protein		Potri.001G257400 [exp]	5.29	0.9812
AT4G01037		AtWTF1	what's this factor?, Ubiquitin...		Potri.002G169300 [exp]	5.47	0.9791
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Potri.001G301000 [exp]	7.48	0.9779	NHD1.2

Compare expression of checked genes

Potri.007G060400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.