Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35830 1658 / 0 ACO1 aconitase 1 (.1.2) AT2G05710 1592 / 0 ACO3 aconitase 3 (.1) AT4G26970 1480 / 0 ACO2 aconitase 2 (.1) AT5G54950 96 / 7e-24 Aconitase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G108100 [exp] 1749 / 0 AT4G35830 1668 / 0.0 aconitase 1 (.1.2) Potri.014G153400 [exp] 1606 / 0 AT2G05710 1695 / 0.0 aconitase 3 (.1) Potri.002G229200 [exp] 1582 / 0 AT2G05710 1674 / 0.0 aconitase 3 (.1) Potri.015G130201 [exp] 145 / 1e-40 AT4G35830 145 / 2e-41 aconitase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028405 [exp] 1652 / 0 AT4G35830 1695 / 0.0 aconitase 1 (.1.2) Lus10041858 [exp] 1645 / 0 AT4G35830 1695 / 0.0 aconitase 1 (.1.2) Lus10015116 [exp] 1580 / 0 AT2G05710 1707 / 0.0 aconitase 3 (.1) Lus10031561 [exp] 1570 / 0 AT2G05710 1674 / 0.0 aconitase 3 (.1) Lus10027165 [exp] 1563 / 0 AT2G05710 1706 / 0.0 aconitase 3 (.1) Lus10039678 [exp] 1554 / 0 AT2G05710 1704 / 0.0 aconitase 3 (.1) Lus10040070 [exp] 1526 / 0 AT2G05710 1620 / 0.0 aconitase 3 (.1) Lus10021533 [exp] 1443 / 0 AT2G05710 1523 / 0.0 aconitase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00330 [poplar] [flax] Aconitase Aconitase family (aconitate hydratase) CL0364 [poplar] [flax] Leu-IlvD PF00694 [poplar] [flax] Aconitase_C Aconitase C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.007G060900.1 pacid=42766503 polypeptide=Potri.007G060900.1.p locus=Potri.007G060900 ID=Potri.007G060900.1.v4.1 annot-version=v4.1 ATGGCGAATGAAAATCCTTTCAAGTCTATATTGAAGACACTAGAGAAACCTGGTGGTGAATTTGGCAAGTACTATAGCTTGCCTGCTCTCAATGACCCCA GAATTGATAGATTGCCATATTCGATTAAGATCCTTTTGGAATCGGCGATTAGAAACTGCGATGAGTTTCAGGTCAAGAGTAAGGATGTTGAGAAGATTAT TGATTGGGAGAATACTTCTCCTAAACTAGTTGAAATTCCGTTCAAGCCTGCAAGAGTGCTTCTTCAGGATTTCACTGGTGTTCCTGCTGTTGTTGACCTT GCCTGCATGCGAGATGCGATGAGTAATCTGGGAGGTGATTCTAATAAGATCAACCCATTGGTTCCAGTTGATCTTGTTATTGATCACTCAGTTCAGGTTG ATGTGTCAAGATCAGAAAACGCAGTGCAGGCAAATATGGAGTTTGAGTTCCATAGAAACAAAGAAAGATTTGCTTTCCTTAAATGGGGTTCAAATGCTTT CCAAAACATGCTTGTTGTTCCGCCTGGGTCTGGTATAGTTCACCAGGTCAACTTGGAATACCTTGGGAGAGTGGTGTTCAACACAAATGGTTTACTTTAT CCTGATAGTGTTGTTGGAACAGACTCGCACACTACCATGATAGATGGATTAGGTGTTGCTGGCTGGGGAGTTGGCGGGATAGAAGCTGAGGCTGCAATGC TTGGCCAGCCCATGAGCATGGTCCTGCCTGGTGTGGTTGGTTTTAAGTTATCAGGAAAACTTAGAGATGGTGTTACAGCCACCGATTTGGTATTGACAGT AACTCAAATGCTGAGAAAGCATGGGGTTGTTGGCAAGTTTGTGGAGTTCTACGGTGAGGGAATGAGTGAATTGTCACTAGCAGACCGCGCTACTATTGCC AATATGTCTCCTGAGTATGGTGCAACGATGGGTTTCTTTCCTGTGGATCATGTCACGCTGCAATATCTGAAACTGACAGGCAGAAGCGATGGAACTGTCT CTATGATAGAATCCTATTTAAGAGCTAACAAGATGTTTGTGGACTACAGTGAGCCCCAGATTGACAGAGTGTACTCTTCTTATATAGCATTGAACCTTCG GGACGTGGAACCTTGTATATCAGGACCTAAGAGGCCACATGATCGAGTTCCTTTGAGAGAAATGAAAGCTGATTGGCATGCATGCTTAGACAACAAGGTT GGATTTAAGGGATTTGCTATACCAAAAGAATCTCAAAGCAAGGTTGCTGAGTTCAATTTTCACGGGACTCCAGCCCAACTGAGACATGGTGATGTTGTTA TAGCTGCTATTACTAGTTGCACAAATACCTCAAACCCTAGTGTCATGCTTGGATCTGCTTTGGTTGCAAAGAAAGCTTGTGAACTAGGATTGGAGGTGAA ACCATGGATTAAGACAAGTCTTGCTCCAGGTTCTGGGGTTGTAACCAAATACATGGAAAAGAGTGGCTTGCAGAAATATCTGAATCAGCTAGGGTTTCAT ATTGTTGGTTATGGATGCACCACTTGCATTGGGAATTCTGGAGATATAGATGAAGCTGTGGCATCAGCTATCACTGAAAATGATGTAGTGGCTGCTGCTG TGTTGTCTGGGAATAGGAATTTTGAGGGTCGTGTCCATCCTTTAACAAGAGCTAATTATCTTGCTTCGCCTCCACTTGTGGTAGCCTATGCACTTGCTGG AACGGTGGATATTGATTTTGAAACAGAGCCAATTGGTGTAGGAAAAGATGGAAAGAAGATATTTTTCAGGGATATCTGGCCTTCTAATGACGAAGTTGCT CAAGTTGTCCATTCAAGTGTGCTACCTGATATGTTTAAGGCTACATATCAGGCAATCACCAAGGGAAATCCCATGTGGAATCAATTATCCATTCCTTCGG GCACTCTGTATGATTGGGACCCCAAATCAACTTACATACATGAGCCACCATATTTCAAAAGCATGACTATGTCTCCTCCAGGACCACATGGTGTGAAGGA TGCTTACTGCTTACTCAACTTTGGGGACAGTATTACAACTGATCACATTTCACCAGCTGGCAGCATCCACAAGGACAGTCCTGCTGCTAGATACCTCATG GAACGAGGGGTTGATAGAAGGGACTTCAATTCGTATGGAAGTCGTCGTGGTAATGATGACGTGATGGCAAGGGGCACATTTGCTAACATTCGAATTGTCA ACAAACTATTGGGAGGAGAAGTTGGGCCTAAAACAATTCATTTTCCCACTAGAGAGAAACTATCTGTGTTTGATGTTGCCATGAGGTACAAGAGTGAGGG ACATGATACAGTTATTTTGGCTGGTGCTGAGTATGGGAGTGGAAGTTCTCGTGATTGGGCTGCCAAGGGTCCAATGCTACTGGGTGTGAAAGCAGTGATG GCCAAGAGCTTTGAGCGAATTCATCGCAGTAATTTGGTGGGAATGGGTATCATTCCACTTTGTTTCAAGTCCGGGGAGGATGCTGAGACACTTGGCTTAA CTGGGCATGAGCGCTACAGCCTTGATCTTCCTAGCAACGTGAGTGAGATTAGACCAGGTCAAGATGTTACAGTGGTGACAGACAATGGCAAGCAATTTAC ATGTACCTTGCGTTATGATACAGAGGTGGAACTGGCTTATTTTGATCATGGAGGCATTCTGCAATATGCCATCAGAAACCTGATTCACACCAAACATTGA
AA sequence Show only first row Show all	>Potri.007G060900.1 pacid=42766503 polypeptide=Potri.007G060900.1.p locus=Potri.007G060900 ID=Potri.007G060900.1.v4.1 annot-version=v4.1 MANENPFKSILKTLEKPGGEFGKYYSLPALNDPRIDRLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWENTSPKLVEIPFKPARVLLQDFTGVPAVVDL ACMRDAMSNLGGDSNKINPLVPVDLVIDHSVQVDVSRSENAVQANMEFEFHRNKERFAFLKWGSNAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTNGLLY PDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIA NMSPEYGATMGFFPVDHVTLQYLKLTGRSDGTVSMIESYLRANKMFVDYSEPQIDRVYSSYIALNLRDVEPCISGPKRPHDRVPLREMKADWHACLDNKV GFKGFAIPKESQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGSALVAKKACELGLEVKPWIKTSLAPGSGVVTKYMEKSGLQKYLNQLGFH IVGYGCTTCIGNSGDIDEAVASAITENDVVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFETEPIGVGKDGKKIFFRDIWPSNDEVA QVVHSSVLPDMFKATYQAITKGNPMWNQLSIPSGTLYDWDPKSTYIHEPPYFKSMTMSPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAARYLM ERGVDRRDFNSYGSRRGNDDVMARGTFANIRIVNKLLGGEVGPKTIHFPTREKLSVFDVAMRYKSEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVM AKSFERIHRSNLVGMGIIPLCFKSGEDAETLGLTGHERYSLDLPSNVSEIRPGQDVTVVTDNGKQFTCTLRYDTEVELAYFDHGGILQYAIRNLIHTKH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35830		ACO1	aconitase 1 (.1.2)		Potri.007G060900 [exp]	0	1
AT1G52080		AR791	actin binding protein family (...		Potri.003G047200 [exp]	11.66	0.8431
AT3G07180			GPI transamidase component PIG...		Potri.002G245000 [exp]	13.26	0.8233
AT3G25430			Polynucleotidyl transferase, r...		Potri.014G018500 [exp]	15.58	0.8102
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Potri.008G058600 [exp]	16.06	0.8398
AT4G27680			P-loop containing nucleoside t...		Potri.012G025351 [exp]	21.54	0.8102
AT3G56680			Single-stranded nucleic acid b...		Potri.010G237500 [exp]	22.47	0.8222
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Potri.008G117700 [exp]	23.81	0.7909
AT5G17900			microfibrillar-associated prot...		Potri.013G065600 [exp]	24.24	0.8208
AT5G24500			unknown protein		Potri.012G021300 [exp]	28.56	0.7376
AT2G17930			Phosphatidylinositol 3- and 4-...		Potri.007G057850 [exp]	28.98	0.7983

Compare expression of checked genes

Potri.007G060900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.