Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17730 352 / 7e-124 NIP2 NEP-interacting protein 2 (.1.2) AT4G35840 350 / 1e-123 RING/U-box superfamily protein (.1) AT5G66070 337 / 1e-118 RING/U-box superfamily protein (.1.2) AT1G74410 141 / 2e-41 RING/U-box superfamily protein (.1) AT3G20395 111 / 8e-30 RING/U-box superfamily protein (.1) AT2G17450 77 / 5e-17 RHA3A RING-H2 finger A3A (.1) AT5G17600 78 / 2e-16 RING/U-box superfamily protein (.1) AT3G18773 74 / 1e-15 RING/U-box superfamily protein (.1) AT1G49200 74 / 1e-15 RING/U-box superfamily protein (.1) AT3G03550 75 / 2e-15 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G108200 [exp] 421 / 2e-151 AT4G35840 369 / 7e-131 RING/U-box superfamily protein (.1) Potri.001G435800 [exp] 157 / 1e-47 AT3G20395 153 / 4e-46 RING/U-box superfamily protein (.1) Potri.005G244800 [exp] 124 / 9e-35 AT4G35840 132 / 3e-38 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 84 / 2e-18 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.019G043900 [exp] 80 / 1e-17 AT3G03550 223 / 3e-71 RING/U-box superfamily protein (.1) Potri.007G111900 [exp] 81 / 2e-17 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1) Potri.017G049300 [exp] 79 / 8e-17 AT4G33565 166 / 6e-48 RING/U-box superfamily protein (.1) Potri.005G244900 [exp] 74 / 2e-16 AT5G66070 79 / 1e-18 RING/U-box superfamily protein (.1.2) Potri.019G010500 [exp] 75 / 5e-16 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028406 [exp] 392 / 5e-140 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10041859 [exp] 392 / 5e-140 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10021524 [exp] 150 / 2e-44 AT3G20395 170 / 7e-53 RING/U-box superfamily protein (.1) Lus10001654 [exp] 132 / 1e-37 AT1G74410 251 / 1e-84 RING/U-box superfamily protein (.1) Lus10021628 [exp] 126 / 2e-35 AT1G74410 250 / 5e-84 RING/U-box superfamily protein (.1) Lus10040073 [exp] 81 / 1e-18 AT3G20395 94 / 5e-24 RING/U-box superfamily protein (.1) Lus10013618 [exp] 78 / 1e-16 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10024405 [exp] 74 / 3e-16 AT4G17905 95 / 9e-24 RING/U-box superfamily protein (.1) Lus10025338 [exp] 74 / 7e-16 AT4G17905 99 / 4e-25 RING/U-box superfamily protein (.1) Lus10012745 [exp] 76 / 1e-15 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.007G061400.3 pacid=42766767 polypeptide=Potri.007G061400.3.p locus=Potri.007G061400 ID=Potri.007G061400.3.v4.1 annot-version=v4.1 ATGGAGGTTTATCCATGCCCATCTCGTTTTTCTATGTCTTCATTGTCTTCTTTTGGGAATTTTGTTGAAAAGGTTAAAGAACTTTGTAACCTTGCTGTTT CTGCTATCATTGGCAACATATTCTCTGCGATCTTCACCTTTTTCTTTGCATTAGTTTGGAAGTTTTTGTTAAAGGAATTGGCATTGTCGAATGCAGTGGG CGCTTTGTTAGGAGCCATGACTGGGGCATTGATAGGCCAAGAAACTGAAAGCGGATTTGTTCGAGGGGCTGCAGTTGGAGCCATATCCGGAGCTGTTTTC TCAATTGAAGTATTCGAGTCATCTCTTGTTCTATGGCAATCAGATGAATCTGGAATTGGTTGTGTCCTCTACTTGATTGATGTTATCGCAAGCCTTCTTA GTGGGCGACTTGTTCGTGAACGCATTGGTCCGGCAATGTTAAGTGCAGTACAAAGTCAGATGGGTGCTGTGGAAACAAACTTTGAGGAGATCACAAACAT CTTTAACACAGGTGGTTCCAAGGGATTACCTGGAGATTCTCTCGAAAAGATACCGAAGATCAAAATCACAAGCAATAACAACGGAGATGCAACTGGAGAA AAAGTCGCTTGTTCAGTTTGCCTTCAGGACTTTCAACTGGGAGAGACAGTTAGAAGCTTGCCTCATTGTCATCACATGTTTCACCTACCTTGCATAGATA AGTGGCTCCTTAAACATGCATCCTGCCCTCTGTGTAGAAGGGATCAGTGA
AA sequence Show only first row Show all	>Potri.007G061400.3 pacid=42766767 polypeptide=Potri.007G061400.3.p locus=Potri.007G061400 ID=Potri.007G061400.3.v4.1 annot-version=v4.1 MEVYPCPSRFSMSSLSSFGNFVEKVKELCNLAVSAIIGNIFSAIFTFFFALVWKFLLKELALSNAVGALLGAMTGALIGQETESGFVRGAAVGAISGAVF SIEVFESSLVLWQSDESGIGCVLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVETNFEEITNIFNTGGSKGLPGDSLEKIPKIKITSNNNGDATGE KVACSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLLKHASCPLCRRDQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17730		NIP2	NEP-interacting protein 2 (.1....		Potri.007G061400 [exp]	0	1
AT5G19450		CPK8, CDPK19	calcium-dependent protein kina...		Potri.009G052700 [exp]	2.00	0.9192	CPK7.1
AT5G54370			Late embryogenesis abundant (L...		Potri.001G405650 [exp]	3.16	0.9263
AT5G05800			unknown protein		Potri.008G196901 [exp]	6.78	0.9229
AT3G50590			Transducin/WD40 repeat-like su...		Potri.005G136300 [exp]	13.78	0.9150
AT2G30700			unknown protein		Potri.007G133733 [exp]	14.69	0.8992
AT2G30050			transducin family protein / WD...		Potri.008G141300 [exp]	15.49	0.9194
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G124200 [exp]	16.12	0.9034
AT3G01750			Ankyrin repeat family protein ...		Potri.010G055700 [exp]	17.20	0.9097
AT3G23610		DSPTP1	dual specificity protein phosp...		Potri.010G033000 [exp]	18.52	0.9103
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.002G071900 [exp]	20.49	0.9047

Compare expression of checked genes

Potri.007G061400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.