Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00350 591 / 0 ATCG00350.1, PSAA Photosystem I, PsaA/PsaB protein (.1) ATCG00340 272 / 5e-85 ATCG00340.1, PSAB Photosystem I, PsaA/PsaB protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G062582 [exp] 604 / 0 ATCG00350 1143 / 0.0 Photosystem I, PsaA/PsaB protein (.1) Potri.013G141912 [exp] 596 / 0 ATCG00350 1439 / 0.0 Photosystem I, PsaA/PsaB protein (.1) Potri.013G142124 [exp] 272 / 4e-85 ATCG00340 1412 / 0.0 Photosystem I, PsaA/PsaB protein (.1) Potri.016G089700 [exp] 216 / 8e-67 ATCG00350 638 / 0.0 Photosystem I, PsaA/PsaB protein (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00223 [poplar] [flax] PsaA_PsaB Photosystem I psaA/psaB protein
Representative CDS sequence Show only first row Show all	>Potri.007G061621.1 pacid=42765205 polypeptide=Potri.007G061621.1.p locus=Potri.007G061621 ID=Potri.007G061621.1.v4.1 annot-version=v4.1 ATGTTAGGCTCTTTAACCATTGTTGTAGCTCACCATATGTATTCCATGCCCCCTTATCCATATCTAGCTACGGACTATGGTACACAACTGTCATTGTTCA CACATCACATGTGGATTGGTGGATTTCTCATAGTTGGTGCTGTTGCGCATGCAGCCATTTTTATGGTAAGAGACTATGATCCGACTACTCGATACAACGA TCTGTTAGATCGTGTCCTTAGGCATCGCGATGCAATCATATCACATCTTAACTGGGTATGTATATTTTTAGGCTTTCACAGTTTTGGTTTGTATATTCAT AATGATACCATGAGCGCTTTAGGGCGCCCTCAAGATATCTTTTCAGATACTGCTATACAATTACAACCCGTCTTTGCTCAATGGATACAAAACACGCATG CTTTAGCACCTGGTGCAACGGCAAGCACCAGTTTGACTTGGGGGGGTGATGATTTAGTGGCAGTGGGTGGCGACGGTTGCTTTGTTACCTATTCCATTAG GAACCGCGGATTTCTTTTTTGGTACATTCATGCATTTACGATTCATGTGACGGTATTGATACTCCTGAAAGGAGTTCTATTTGCCCGTAGCTCTCGTTTG ATACCGGATAAAGCAAATCTTGGTTTTCGTTTCCCGACCTGGAAGAGGGGGGACAAAGTATCCGCTTGGGATCATGTCTTCTTAGGACTATTTTGGATGT ACAATGCAATTTCGAGTTCTATTACTATTAATGGATGGCTCCGCGATTTCTTATGGGCACAGGCATCCCAGGTAATTCAGTCTTATGGTTCTTCATTATC TGCATATGGCCTTTTTTTCCTAGGCGCTCATTTTGTATGGGCTTTTAGTTTAATGTTTCTATTCAGCGGTCGTGGTTATTGGCAAGAACTTATTGAATCA ATCGTTTGGGCTCATAATAAATTCAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTCACGCATTATACAAGGACGTGCTGTAGGAGTAACTCATTACCTTC TGGGTGGAATTGCCACAACATGGGCGTTCTTCTTAGCAAGAATTATTGCAGTAGGATAA
AA sequence Show only first row Show all	>Potri.007G061621.1 pacid=42765205 polypeptide=Potri.007G061621.1.p locus=Potri.007G061621 ID=Potri.007G061621.1.v4.1 annot-version=v4.1 MLGSLTIVVAHHMYSMPPYPYLATDYGTQLSLFTHHMWIGGFLIVGAVAHAAIFMVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIH NDTMSALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPGATASTSLTWGGDDLVAVGGDGCFVTYSIRNRGFLFWYIHAFTIHVTVLILLKGVLFARSSRL IPDKANLGFRFPTWKRGDKVSAWDHVFLGLFWMYNAISSSITINGWLRDFLWAQASQVIQSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIES IVWAHNKFKVAPATQPRASRIIQGRAVGVTHYLLGGIATTWAFFLARIIAVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
ATCG00350		ATCG00350.1, PS...	Photosystem I, PsaA/PsaB prote...		Potri.007G061621 [exp]	0	1
ATCG00350		ATCG00350.1, PS...	Photosystem I, PsaA/PsaB prote...		Potri.007G062582 [exp]	1.00	0.9701
ATCG00280		ATCG00280.1, PS...	photosystem II reaction center...		Potri.010G032700 [exp]	3.60	0.8459
ATCG00350		ATCG00350.1, PS...	Photosystem I, PsaA/PsaB prote...		Potri.007G061601 [exp]	4.89	0.8983
ATCG00350		ATCG00350.1, PS...	Photosystem I, PsaA/PsaB prote...		Potri.016G089700 [exp]	6.32	0.8540
ATCG00490		ATCG00490.1, RB...	ribulose-bisphosphate carboxyl...		Potri.013G162700 [exp]	6.32	0.8623
ATCG00700		ATCG00700.1, PS...	photosystem II reaction center...		Potri.019G028300 [exp]	7.00	0.8828
ATCG00700		ATCG00700.1, PS...	photosystem II reaction center...		Potri.007G062182 [exp]	9.48	0.8244
ATCG00490		ATCG00490.1, RB...	ribulose-bisphosphate carboxyl...		Potri.012G062601 [exp]	10.58	0.8260
ATCG00350		ATCG00350.1, PS...	Photosystem I, PsaA/PsaB prote...		Potri.004G128501 [exp]	12.00	0.8616
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Potri.017G140700 [exp]	12.84	0.8438

Compare expression of checked genes

Potri.007G061621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.